Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1085 ATGGGAAGCGCGCTTCTTTCCAATAAGGTCTTTGCTAAGTTTCAAGAAACAAACACTAGAATGAAGGACCATAGCATGGAGGGGAGAGCCTTGGAGAACTCCTCTAGTATTGGAAGCGCGCTTCTTTCCAATAAGGTCTTTGCTAAGTTTCAAGAAACAAACACTAGAATGAAGGACCATAGCATGGAGGGGATGGGCTTGTGTGAGAAATGGATGATAGTAGATGATGCTTCAAGTGGCTCTGTGATTGAGCAGCATTTGTGTTCAGAGTTTCCAGTGCAGTCTGTTCCTGTGGAGCAGTCCTGTTCAGAAGTAGCTTGCAATCTGGTTGACTCTAATGTTGACCTCTCCAATATGCTGGATGATTGTAAGGATTTGTCTACAGAGGGCGAATCTGGTTCTGCAAGCTGTATTGATGGCAGGGATATGTCCAGCGATACTAGAGTGAGTGAAGATGAAAATGCGGATATGTTGCTAGTGGAGAAAACCTTGGACAGTGATAACCAGAATTGTTTCAGGACATCTTGTGACCAAATTGAAGTTTCTAACCCAGAAAGTGGTGGGTTATGCTCTGAAGAAAAACCTGAAGGAGAAGATGATTGTGAAATACCATCAGAGTTTATATCTGTCAACGGTTCACCCAAGGATGAGAAGAGCAGTATATTCCCCTCTGCAGGAGATACTTTAGTGGTTGTGGAAGACAAAAACAATGAAGCTTGTTTACTCGCTGATGATTGTGATCATATATCTAATTGCATTCATTCTGAATTGTCCCTGCAATCAGAACCTATGACTGGCTTTCTAGTTAATTCCCACACAAAGAATGAGGAGCAGGACATTATGAGAAATATAGATCCCTTGGAGGTTGTAAACAACTGCAATGCTTGTGGGATGGAATCAGCTGTTTGCAAGCAGATATCTCCTTCTCAGGGTAGTGAATTGCCCTCAGATGCATTATATACTGAAGGCAATATTTTATGTGGGAGGGTAGTGGTTGCCTGCAAGCAGTTATCTCCTTCACAAGGCAGTGAAGTTCCCTCAGATGCATTATATACAGAATTAGAGAGCACAAGTGATCAGCTGCTTGATCAGAAAGATGGTGAGGATTGCAATAGTCCTTATGAAGAAAGGGTCAAAGATTCTGCTGATAAAGAAGGTAAAGTTGATACATGTTTCCAAGTGTTATCCTCGCCAGGCTGCCAGAGGACCTTGGGGAGTTCACTTGTAGCTTATTCACTGAGTAAGGCTCCGCAGTTGGAGCAGGGGATTGATAAGAGTAACATTGATCCTTATGCAGATGTTACAAAAGTTCTGGAGCAAAATATTGACGTAATAAATGAAATAAATATTGAAATGAAGCATAACATATTGCAAATAGAAGGTAATTCCTGTAAATTGAAGGACAGTTCCCCAGAAATTACTAGCAATTGTACCTTTAGAAAAACACTTTCTTCTGAAGTAGGTCATGCTGCTGTTGTTTCTATCAGTAATAGCCCTTCAAAGGAGGTTTGTGATCTCCTACTGAAGGATAATAATTGTTCTATCTGTTATAGTAGCTCTGTAGGCAATTCTGGACAGACAGATAATGAAGGAAAAGATATTGTCAAAGTTGATTGTATCACTGAAAGCAAATGTTCTGACATTGTATTATTGCCTTCTCAAAGGAGCAGTCGAAGAAGGAAATCTGGTCGTAAGACATCAACCAAAAGGGCTCTAAGAAAATGCAATAACCAAGTCAGTGTGCCTCACCCAGGGTGGGGTATGAAGATAATTTTAAAGGCTGCTAGAAAGAAAAGAAGCTGTTTCTCCAAACCAGCTCGCTCTTCTATCTGGGGTTTGCTAGGGAACATTACACAATTTTTTGAACAGGATAGTAAGTTCAGGGTTAATGACGTTATGTGTGAAGGATTGAGGAAAGCTGGGGACAGCTGTCAAAGTGGCAAAACAAATAAGAATGGTGCATATTCTGGCTCATTGAGTTCAATGCAGAAGTGCAGTGCTTCGACTACTCGCTTTCGTCTGAAGATCAAAATGGGTAAAAATTTTGATTTAAGTTGCCCAAATCTCGTGGTTCCAGAAGTTGTTGATGGCATGGCTTCGGCTTCTGCTTTGGATTCCTACTTGGGATCTGGTTCACTTTCCCAGAAAGTAGATGGCAATCCTGGAGATAAAATTTCGGAAGAAGTGGCTGTGGACAAGTTTGAATCCTATGAAAAGGACCTGGACAAGGATGCTGTTGTTCTGAATAGACAGATTGCAAATAACCACTTAGAAAGTACCACACTAATGGAGAAATCAGATGGTGATACAGAGGAACTTTGTCTTGTGGCTCCTTCAAAGAGGGTGGTTGAAGCATTGATGGAGCCCATCAGTAGTAAGGTTATGGATCCTGGAACTTCACCTGATTCAGAAGTAATCAATTCAATTCCTGAAGTTCAGGTGGGAGAAAAACAGCAAGAAGGAGTGCATGATGCTGATTTAGGTTCTTCTAAGGAGTCTAATTCTCCTGTGTATGACACTGGCAGCAAGAGAGGGAAGAAGAAAAACAAGCTTGCTTGTTCAAGTAATTGTATAATAAAAGATGGATCACGAGGTCCACAAAGGAAAAATAAAGCTAAGCACTCGAAGAATAATGGACGTAAGAAGAATTTTAAGGATGTGGTTAGCTCTGTGAAATTGCATACTTCCACTGATATAAATGCATCAAGCAATTCAGTAAGCTGTAAAGACTTACCCTCAGAATCATTGCCCCTTTCTGGAGAGATTGGACTTGAAGACTCCACTGAGGCCTTGAAAGTTCAAAGTAGCGTGGAAGTTAAGACATCTTGTAGCCCAGCTGTTGACAATGGGTATTCAGAATCTAATGGCTTTGAGAATTTGCTGTCTCTTGAAAGACCTTTGGGGCGTAAACTTCCCAAAAGCCTTAAATCTAGTAAAGTGAGCAAGACCAAATCTGAAGCTTCCGAATCAAAGAGCAGGAAAAAGACTGCTTGCAGACGGAGGGAGAAACAACAGAGGCCCGTTGATAAGAGCGAAGTTAATGGAAAATGTGTCTCTGATAAAGTTAAATGTGAAGTAGAAGATTTCCTACATACAGATAATAGCATTGTTGGAAAGCACAAGTTGGATGCTGTTGAAAAACTTAATGCTGGTGATGTCAAAATATCAGTCAATGTGTCTAATTTGGACATGGTACCTGGGGTTGGTTTGGGGGAGCAGCATCTATCACCACGTAATGCATGGGTGCGTTGTGATGATTGCCACAAGTGGCGGCGTATTCCAGCTGTGCTTGCAGACCTAATTGATGAAACAAACCGCACCTGGTTGATCAGGGACTCATTCAAATCCATAGAAGATCATTTCTTACTGACATGTAAGGACAGCATCGATAAATCTTTTGCTGATTGCTCTATCCCTCAAGAAAAGTCAAATGCAGAGATCAATGCAGAGTTGGGATTATCAGATGCATCCGGTGAAGAAGATGCTTATGAAGACTGTAAAAATTATAAGGAATTGGAATATCAACGCCCAACGTTTCCCCAAGAGTCTACTTTTACTCGTATATATACCAATGAGTTTCTGCATCGTAGCCACAAAACTCAGACTATTGATGAGATAATGGTTTGCCATTGCAAACCACCTCTGAAAGGTCGGTTGGGTTGTGGAGATGAATGTCTAAACCGGATGCTTAACATCGAATGTGTTCAAGGAGCCTGCTTATGTGGGGATCTTTGTTCAAATCAACAGTTCCAGAGACGCAATTATGCCAGACTAAAGTGGTTTAAATGTGGCAGAAAGGGTTATGGGCTGAAGGCGCTTGATAATATATCTAAAGGGAAGTTTCTTATTGAATATGTTGGAGAGGTGCTTGATGTGCATGCATATGAGGCACGGCAAAGAGAATATGCTTTGAAGGGTCATAGACATTTCTACTTCATGACATTGAATGGCAGTGAGGTGATAGATGCGAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGTACAGAAAAGTGGATGGTGAATGGAGAAATCTGTATTGGACTCTTTGCATTGAGGGATATTAAGCAGGATGAAGAGGTGACTTTTGATTACAACTATGTTAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTCAATGTCGAGGTTATATCGGTGGTGATCCACATAATACTGACATCATTGTTCAAGGTGATTCAGATGAAGAATTTCCTGAACCTGTCATGCTTACTGAAGATGGTGAAATTGGATACGGGCCAGATGGTAGTCCAGAGAAAGAGAGTTCTATGAACCCTGCGTCTGCTATCTCCCAGTTGCACAGCTCATTAGAAGTGGAAGACTCAAAGGGCAATTTATTATCTCATGTTCAAGTGAAAGAATTTCCCCAGCAAATGGAGGATGTAACAAGCAAACCCATGCCTGTTGTACAACATGGATATGCAGTAGACTCTGAGCTCTCTGATAAAACTTCCTCCAGTCAAAAATTAGAGACTTCTTCCACTACATCTGTCAGCAAATCCAAGTCTGAAATTGTTGATAGGTGTGATCCTTCAGAATCACATCTGCTTGTGAAGACTTCTCGAGTTAATGGTTCTGTTAAAAAGGGAAAAGTACGTACTAATCCTCCAAATGGCCTCAAAGCTGAGGTGACAACCAACAGGTTGCAGGCGTCATCCATCAAACTTAAAAAAGTAGTTGAAGGTTCTTCCAATGGCCGTTTTGAAGCAGTCCAGGAGAAACTTAACGAATTGCTGGATGGAGATGGAGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAGCTTCTGCTTCTCACTGTGGCATCTGGTGATAGGAGTAATGGTGAAGCGATTCAAAGGAATCTAAACGTTGGTTGCAGCAACCGAGATCTTTCCATGATTCTTGATGCCCTTCTGAAAACGAAATCTGGAGCTGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATAATGAAGCAGTACAGGGGGGACTTCAAAAAAACTCCTATACTACGAAAACTTCTTAAGGTCTTAGAGTACCTAGCAGCAAGGAAGATTTTGACATTTGAACATATTTGTGGCGGTCCCCCTTGTCGTGGAATGGAGAGCTTTAGGGAGTCAATGCTGTCTCTGACGGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCTAGAAATGTCAGAAAACATGGCTATGTAGACAGGGATGATGGTAGGATGGAATCTTACAAGAGTTTCAACTGCAATGGATTTTCAGCATCACAAAACTATAGACATGAGCAGGATTTAAGACCTACAGAAGCAATTGATTGCGTTCTGCAGTCAATGGTTGTAACAACTCCTGTCAATTCTGATGCCCATGAGGGCTGCTCTGCACCAGCTCTTGATGGGTGTGAAATCAGTGGGGGGAAAAGACGGAAGCGCAAAAGCCGATGGGATCAACCAGCAGAGACAAATTCAGATATAGTGTCTTATGCTCATATGGAACAAAAGATTGACTCTGGGCTATCAAAGCAAACTGATGCAATTATGAACTCTATTGATGGAAGACAGAACATATCTGAGGATGCTCCACCAGGGTTTTCATGTTTATTTCAGCCACACTTGGGTACTTTCAATGCTTCACGAAACTCTGGTGATCTTGCTTTGCAAAATGCGGGCCATTCTGGATGTCCCCCTGATGCTGTTGTTGGTCATCCAAGGGAAAAATTCAACTCTCGATTGCCTGTCTCATATGGAATGCCATGGCCTGTTGTCCAACAATATGGAACACCTCATTCTGAAACTGCAGAGACTTGGGTCACTGCACCAGGCATGCCTTTCAACCCTTTTCCTCCACTACCCCCATATCCACGGGACAATAAAGACTGTCAACCTTCTAATACCACTAATGCTGTGAAAATGGATCAGCCTGCTGAGGCTGATATGACTCCCAGCACAACTGGTGCTAATGCTGAGGACCTTTCATCTGAGGATAATGACCACATTTCTAAACGATTGAAGGGTTCCCCTTATGATTTGGGAAGAAGTTACTTTAGGCAACAGAAATGGAATAAATCAAAAATACCTCGACCATGGTCCAGGAGTAATTTATGGGGATGTGATGGGAACAATTCTAGGGGTGTTATGTGCAGTATAGGTGTAGGAGATGTACCTGCGGATGCAATAGGTAGAGCAGCCGAGAAAGGTGGCAATAATATTGATTAG 6285 0.4173 MGSALLSNKVFAKFQETNTRMKDHSMEGRALENSSSIGSALLSNKVFAKFQETNTRMKDHSMEGMGLCEKWMIVDDASSGSVIEQHLCSEFPVQSVPVEQSCSEVACNLVDSNVDLSNMLDDCKDLSTEGESGSASCIDGRDMSSDTRVSEDENADMLLVEKTLDSDNQNCFRTSCDQIEVSNPESGGLCSEEKPEGEDDCEIPSEFISVNGSPKDEKSSIFPSAGDTLVVVEDKNNEACLLADDCDHISNCIHSELSLQSEPMTGFLVNSHTKNEEQDIMRNIDPLEVVNNCNACGMESAVCKQISPSQGSELPSDALYTEGNILCGRVVVACKQLSPSQGSEVPSDALYTELESTSDQLLDQKDGEDCNSPYEERVKDSADKEGKVDTCFQVLSSPGCQRTLGSSLVAYSLSKAPQLEQGIDKSNIDPYADVTKVLEQNIDVINEINIEMKHNILQIEGNSCKLKDSSPEITSNCTFRKTLSSEVGHAAVVSISNSPSKEVCDLLLKDNNCSICYSSSVGNSGQTDNEGKDIVKVDCITESKCSDIVLLPSQRSSRRRKSGRKTSTKRALRKCNNQVSVPHPGWGMKIILKAARKKRSCFSKPARSSIWGLLGNITQFFEQDSKFRVNDVMCEGLRKAGDSCQSGKTNKNGAYSGSLSSMQKCSASTTRFRLKIKMGKNFDLSCPNLVVPEVVDGMASASALDSYLGSGSLSQKVDGNPGDKISEEVAVDKFESYEKDLDKDAVVLNRQIANNHLESTTLMEKSDGDTEELCLVAPSKRVVEALMEPISSKVMDPGTSPDSEVINSIPEVQVGEKQQEGVHDADLGSSKESNSPVYDTGSKRGKKKNKLACSSNCIIKDGSRGPQRKNKAKHSKNNGRKKNFKDVVSSVKLHTSTDINASSNSVSCKDLPSESLPLSGEIGLEDSTEALKVQSSVEVKTSCSPAVDNGYSESNGFENLLSLERPLGRKLPKSLKSSKVSKTKSEASESKSRKKTACRRREKQQRPVDKSEVNGKCVSDKVKCEVEDFLHTDNSIVGKHKLDAVEKLNAGDVKISVNVSNLDMVPGVGLGEQHLSPRNAWVRCDDCHKWRRIPAVLADLIDETNRTWLIRDSFKSIEDHFLLTCKDSIDKSFADCSIPQEKSNAEINAELGLSDASGEEDAYEDCKNYKELEYQRPTFPQESTFTRIYTNEFLHRSHKTQTIDEIMVCHCKPPLKGRLGCGDECLNRMLNIECVQGACLCGDLCSNQQFQRRNYARLKWFKCGRKGYGLKALDNISKGKFLIEYVGEVLDVHAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEEVTFDYNYVRVFGAAAKKCYCGSPQCRGYIGGDPHNTDIIVQGDSDEEFPEPVMLTEDGEIGYGPDGSPEKESSMNPASAISQLHSSLEVEDSKGNLLSHVQVKEFPQQMEDVTSKPMPVVQHGYAVDSELSDKTSSSQKLETSSTTSVSKSKSEIVDRCDPSESHLLVKTSRVNGSVKKGKVRTNPPNGLKAEVTTNRLQASSIKLKKVVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLLLTVASGDRSNGEAIQRNLNVGCSNRDLSMILDALLKTKSGAVLNDIINKNGLQMLHNIMKQYRGDFKKTPILRKLLKVLEYLAARKILTFEHICGGPPCRGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRNVRKHGYVDRDDGRMESYKSFNCNGFSASQNYRHEQDLRPTEAIDCVLQSMVVTTPVNSDAHEGCSAPALDGCEISGGKRRKRKSRWDQPAETNSDIVSYAHMEQKIDSGLSKQTDAIMNSIDGRQNISEDAPPGFSCLFQPHLGTFNASRNSGDLALQNAGHSGCPPDAVVGHPREKFNSRLPVSYGMPWPVVQQYGTPHSETAETWVTAPGMPFNPFPPLPPYPRDNKDCQPSNTTNAVKMDQPAEADMTPSTTGANAEDLSSEDNDHISKRLKGSPYDLGRSYFRQQKWNKSKIPRPWSRSNLWGCDGNNSRGVMCSIGVGDVPADAIGRAAEKGGNNID 2094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1085 2094 ProSiteProfiles Post-SET domain profile. 1381 1397 IPR003616 -
Glsi08g1085 2094 ProSiteProfiles SET domain profile. 1256 1373 IPR001214 GO:0005515
Glsi08g1085 2094 Pfam SET domain 1267 1373 IPR001214 GO:0005515
Glsi08g1085 2094 Gene3D SET domain 1153 1411 IPR046341 -
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 812 886 - -
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 1970 2030 - -
Glsi08g1085 2094 ProSiteProfiles AWS domain profile. 1204 1254 IPR006560 GO:0005634|GO:0042054
Glsi08g1085 2094 FunFam Histone-lysine N-methyltransferase 1155 1411 - -
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 2014 2028 - -
Glsi08g1085 2094 Pfam CW-type Zinc Finger 1081 1142 IPR011124 GO:0008270
Glsi08g1085 2094 CDD SET_SETD2 1255 1397 IPR044437 GO:0010452|GO:0046975
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 979 995 - -
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 1823 1845 - -
Glsi08g1085 2094 SMART shorttest3 1204 1255 IPR006560 GO:0005634|GO:0042054
Glsi08g1085 2094 PANTHER SET DOMAIN PROTEINS 583 1844 - -
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 971 1012 - -
Glsi08g1085 2094 SMART set_7 1256 1379 IPR001214 GO:0005515
Glsi08g1085 2094 ProSiteProfiles Zinc finger CW-type profile. 1075 1144 IPR011124 GO:0008270
Glsi08g1085 2094 Pfam AWS domain 1219 1253 IPR006560 GO:0005634|GO:0042054
Glsi08g1085 2094 SMART PostSET_3 1381 1397 IPR003616 -
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 1495 1519 - -
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 1981 2013 - -
Glsi08g1085 2094 SUPERFAMILY SET domain 1184 1394 IPR046341 -
Glsi08g1085 2094 Gene3D - 1078 1152 - -
Glsi08g1085 2094 MobiDBLite consensus disorder prediction 1494 1558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1085 Glsi-ChrGlsi08 7959343 7980730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1085 1239 1396 C2H2 Transcription Factor Family AT2G23740 33.143 2.34e-19 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi08g1085 SET 6.5e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1085 08 7959343 7980730 Glsi08g1085 08 7959343 7980730 ECH