LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g1083	ATGCTGCAAATAGGCTCAGCCGGAGAAGCCCATGATGGAAACTCCGGTGGTCGGGCGGTGGTGGTGGGAATGAAGTTGGACTCCCCCAGCAGAGAGTTGCTCACCTGGGCTTTGGTCAAAGTCGCTCAGCCGGGTGATGTTGTGGTTGCTCTTCATGTTCTTGGGAACAATGAAATCGTAAATCGAGACGGAAAATTGTCGTTTCTTTCGCTAGTCAACGCATTCGACTCTGTTCTTGCTGTTTATGAAGGTTTCTGCAATTTGAGACAGGTGGATCTCAAGCTCAAAATTTGCAGAGGTTCATCAGTCCGAAAAATTTTAATCCGAGAAGCAAATGCTTATTCTGCAACTCATTTTATTGTTGGAATAGCCCAAGGCCTCCATACAATTCGTTCATCTACCTCCGTAGCTAAGTACTGTGCTAAAAAGTTATCCAAGAATTGCTGGGTTCTCGCTGTTCACAATGGCAAAGTCGTGTTCAAGAGGGACGGCTCACCAAAAACTCCTGCTGACTTCCAAGGAATTGATCGTCATTGCAGAAATGGTTTGCTTGGTTCTATTCACCGGGCATTCAAAAAGAGTTCTAAAGTACTAAACGATGATTATACAGCTACAGGAAATATGCATGATAAGAGTACTTGCCGAAATTCGGATCATAACTTGGCTAAGTTTTTTCTGGATTCCGAAGAGATTGTTGTTCAGAAACCGAGCTGCTCAATATGTGGTCCTACCTCTGCATTACCAAACACTTCTTGCCACCAGTCTGCAGAAGAGTCTTCTGGGGATGGTGGTAACGAGAACTCTCTGGCTATAGTGCCTGTTCAGACAATTGAGGCAGCATCAAGTACAACAACTTTGTCTGTCAGGAAACCACCTGAGCCGAAACCTGGTTGGCCACTTCTACAACGGACAGTTTTGTCTGACAGACAGTGTCCTGATAGATCATTGGTGCACCAGATATCTGTGGTCCAGTGGGCTATGCAGTTGCCCTGTAGAAATCTTCGATATGATACGGATCAATCTATAGCCTTAGATGGCGAAAGTGGTGCTATAGTTCCAGTGGGTGCTGAAATAGGGACTGCTTATTCTTCACCTGACAGCATCTCAAGAACTATTCCTAAAGAACTGGAGGATCTTCATGAGAAATACTCATCAACATGCAGATTGTTTAAGTACCAAGAACTTGTGTTGGCAACATCAAATTTCTTGCCTGAAAACTTGATTGGGAAAGGAGGAAGCAGTCAGGTTTATAGAGGCTGCCTTCCTGATGGCAAGGAACTTGCCGTTAAAATCTTAAAGCCTTCTGATGATGTTTTAAAGGAGTTTCTATTGGAAATAGATATCATCACTACCTTGCATCATAAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGGATGGCAATCTTCTTTTGGTCTATGATTTTTTATCAAGAGGAAGCCTTGAAGAGAACCTTTATGGGAATAAGAAAAATCCACTTGTTTTTGGTTGGACTGAGAGAAATAAGGTGGCAATTGGTGTTGCTGAGGCTTTAGATTATCTGCACAATAATGGTGCTCAACCTGTGATCCACAGGGATGTAAAATCATCAAATGTGTTATTATCTGAGGACTTTGAACCCCAGCTCTCTGATTTCGGCCTTGCTAACTGGGTGTCATCCTCATCTTCACATATAACCTGCACAGTTGTTGCCGGAACTTTCGGTTACTTGGCTCCTGAGTACTTCATGTACGGCAAAGTAAATGATAAGATTGATGTCTACGCATTTGGTGTCGTACTCCTTGAGCTTCTTTCGGGAAGAAAACCCATAAGTGGTGATTATCCAAAAGGTCAAGAGAGCCTGGTTATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTCTCAATTGTTAGATCCAAGTTTGGGTGATAACTATGATCATGAGCAGATAGAGAGGATGGTCTTGGCAGCCACACTCTGTCTTAGACGTGATCCAAGAGCTAGGCCTCAAATGAGCCTCATTTCAAAGCTTCTTCAAGGTGATGTTGATGTGATCAAGTGGGCAAAGTTAGAAATTGATGCTTCAGAGAAATTACGAAGGGTCGATGATGAAGCTTGTCCACCTTCTAATCTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAGGATGACTCACTCTCCATGTGCAGCGTTGAGCAGAATGTGTCGTTGGAGGACTATTTGAGAGGCAGTTGTCATCTTCTTGTAATGAACGGGGTGATACTATTCAACTTTCTTTGCCGTTTTCGCTCATACGAGAGGGAGTTCAAGATTGTTCCTTTGGGGGCGAGTAAAGTAGTAGTCCAGCGCTGCTACCAGATTTCACCTCACAGCATAAACCAATTAGTCCAAAGAGAAACGCCTAGTATACCTACAAGCCTACAACGCCAACGCCGTGGGGATTTTGCAACGAATCGTGCTGCAACTTCTGAAGGTTTTGGAGATATATCTAGCCAGAGTATAGTATCGAGGAATATTGTTTCGAAACCTGGAGATCATTCTGGAATGTGA	2538	0.435	MLQIGSAGEAHDGNSGGRAVVVGMKLDSPSRELLTWALVKVAQPGDVVVALHVLGNNEIVNRDGKLSFLSLVNAFDSVLAVYEGFCNLRQVDLKLKICRGSSVRKILIREANAYSATHFIVGIAQGLHTIRSSTSVAKYCAKKLSKNCWVLAVHNGKVVFKRDGSPKTPADFQGIDRHCRNGLLGSIHRAFKKSSKVLNDDYTATGNMHDKSTCRNSDHNLAKFFLDSEEIVVQKPSCSICGPTSALPNTSCHQSAEESSGDGGNENSLAIVPVQTIEAASSTTTLSVRKPPEPKPGWPLLQRTVLSDRQCPDRSLVHQISVVQWAMQLPCRNLRYDTDQSIALDGESGAIVPVGAEIGTAYSSPDSISRTIPKELEDLHEKYSSTCRLFKYQELVLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFLLEIDIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENLYGNKKNPLVFGWTERNKVAIGVAEALDYLHNNGAQPVIHRDVKSSNVLLSEDFEPQLSDFGLANWVSSSSSHITCTVVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKVSQLLDPSLGDNYDHEQIERMVLAATLCLRRDPRARPQMSLISKLLQGDVDVIKWAKLEIDASEKLRRVDDEACPPSNLQSHLNLALLDVEDDSLSMCSVEQNVSLEDYLRGSCHLLVMNGVILFNFLCRFRSYEREFKIVPLGASKVVVQRCYQISPHSINQLVQRETPSIPTSLQRQRRGDFATNRAATSEGFGDISSQSIVSRNIVSKPGDHSGM	845

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g1083	845	SMART	serkin_6	402	683	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1083	845	Gene3D	Transferase(Phosphotransferase) domain 1	477	689	-	-
	Glsi08g1083	845	ProSitePatterns	Protein kinases ATP-binding region signature.	408	430	IPR017441	GO:0005524
	Glsi08g1083	845	PANTHER	OS08G0249100 PROTEIN	159	684	IPR046958	-
	Glsi08g1083	845	SUPERFAMILY	Protein kinase-like (PK-like)	383	675	IPR011009	-
	Glsi08g1083	845	Gene3D	Phosphorylase Kinase; domain 1	366	476	-	-
	Glsi08g1083	845	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	523	535	IPR008271	GO:0004672\|GO:0006468
	Glsi08g1083	845	FunFam	Putative receptor-like serine/threonine-protein kinase	477	689	-	-
	Glsi08g1083	845	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	17	154	-	-
	Glsi08g1083	845	ProSiteProfiles	Protein kinase domain profile.	402	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1083	845	Pfam	Protein kinase domain	406	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1083	845	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	371	476	-	-
	Glsi08g1083	845	CDD	USP_Like	20	150	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g1083	Glsi-ChrGlsi08	7949495	7953911	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g1083	389	669	Trihelix Transcription Factor Family	AT1G68690	44.406	3.63e-72	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Glsi08g1083		Pkinase	3.3e-43	CL0016