Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1076 ATGGAAACTGAGGATCGAACTAGCAATGCTGATAACACAGAATGTTCTGAAACCGTTCAGTACTTGAAGAATGAAGCTGTAAATATGGGGGTAGCAATTGCAGATAGGAATGATATTATTAAAGGGGTGCAGCGCCTGAAAAGTGAAGCTGTGAATAATAGGGTGGCAATTGCAGATGCAAATGGTGTTGCTGAAGGGGACTCTGGTGGAATTGAATGTTTTCGAACTTACAAGAGGCGTAAGCATGTAAAGTTGAGTTCAGAAAGCAAAGCTCAAGAAAATAACAGAGCATACGTTGAAGCTGTTGTGAAGGAACCATGTGATGTTTCTGTAGGCAATACTTTAGATAATTATTCCCATGGACATTGGGGAAATGTTGTACTAAGGCATTTGTATCAGTCATTGAGTGATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCACTCATGCGCCATCGTAGAATTAGTTGTGCCACAACAGTTAAGGGAATTTGTAAATTTGACAGAGATGGACAAGAATACTCTTCACGATTTGAGGGGACGTCTCATAGATTTCAGAACGAAGTTAATGGCCATGCAAACGTCTTACATAACGGATGTTCTAGTGAATCAGATGGCCCCAATGCAACTGAGATGTGTCAGCGTGCACTCTGTAATATCTTAGTTTCTGAGAAATTCAATTTGTTATGTAGGGTGCTTATTGAAAATTTCAAAGGAATGAAGCCTGAAAGTGTATTTGACTTTAGCCTCATAAACTCAAGGTTGAAAGAGCGAGCTTATGAACAGTCACCTGCACTTTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAATGAGATTGTCTCTCTAGCCAAGAGCCTTTCAAACATGTCAAGAACTTCCTACAGTGAGCAGGCAGGAGTTTCAGTGCACAGCACATTCAAAGATGGAAAGCAAGAGTTCTGTAACCGGGAATCTGACTCTCACATGAAACCGGAGCAGCCAGAAGACTGTGGCATGCATAAAATTTGCAGTTGCAGGCATTGTGGAGACAAAGCAGACGGAGCAGACTGTTTGGTTTGTGATTCATGTGAGGAGATCTACCATGTCTCCTGTATTGAGCCTGCTGTCAAAGAGATACCCCACAAAAGCTGGTACTGTGCCAATTGCACCGATAGTGGAATTGGATCTCCACATGAGGATTGTGTGTTATGTGAAAGGTTGAATGTCACAAAGACCTTGAACAACATAGTTGGCGATGAAAGCTTCCCTACAAATGAGGAAACAATTAATGAATTGGAAGATAATTCAAATTGTACGTATGATGGGGCTCAAGCATCCAGAAGTGGGAAAATTTTCTCTGATTGCAAAATTTGTGGAAATGAAGCAGATGGTGAAAAAATTAAAATCTGTGGCCACTCCTTCTGCTCCAATAAATACTACCATGTAAGGTGTTTGACAAGTAAGCAGTTAAAGTCAAATGGTCCCTGTTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCCTCGCTGATCGAGATGATGATGAGATTGTTCTCTGCGATGGCTGTGATCATGCATACCACATCTATTGCATGAAACCTCCACGAACTTCTATTCCGAAAGGAAAATGGTTTTGCAGAAAATGTGATACAGGGATCCAAGCAATACGCAGGGCAAAAAAGGCATATGAGAGAAACAAGCAGAGAAAAACAAGTCACGACGGTTCAAAGCCAAGTGATAGTTTTGAAAAAAAGTGGAACAATAAACATGGACGAGAATTGGAGAAAGGTGGGGGAATGGACATGCTTTTAACCGCAGCCAATACTTTGAATTTCGAAGAGAACTTGGCTGCAATCCAGACACATAGAACATGA 1872 0.4135 METEDRTSNADNTECSETVQYLKNEAVNMGVAIADRNDIIKGVQRLKSEAVNNRVAIADANGVAEGDSGGIECFRTYKRRKHVKLSSESKAQENNRAYVEAVVKEPCDVSVGNTLDNYSHGHWGNVVLRHLYQSLSDDKGGIEGCMREALMRHRRISCATTVKGICKFDRDGQEYSSRFEGTSHRFQNEVNGHANVLHNGCSSESDGPNATEMCQRALCNILVSEKFNLLCRVLIENFKGMKPESVFDFSLINSRLKERAYEQSPALFLSDIQQVWRKLQDTGNEIVSLAKSLSNMSRTSYSEQAGVSVHSTFKDGKQEFCNRESDSHMKPEQPEDCGMHKICSCRHCGDKADGADCLVCDSCEEIYHVSCIEPAVKEIPHKSWYCANCTDSGIGSPHEDCVLCERLNVTKTLNNIVGDESFPTNEETINELEDNSNCTYDGAQASRSGKIFSDCKICGNEADGEKIKICGHSFCSNKYYHVRCLTSKQLKSNGPCWYCPSCLCQVCLADRDDDEIVLCDGCDHAYHIYCMKPPRTSIPKGKWFCRKCDTGIQAIRRAKKAYERNKQRKTSHDGSKPSDSFEKKWNNKHGRELEKGGGMDMLLTAANTLNFEENLAAIQTHRT 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1076 623 PANTHER OS02G0192300 PROTEIN 248 390 - -
Glsi08g1076 623 SUPERFAMILY FYVE/PHD zinc finger 334 390 IPR011011 -
Glsi08g1076 623 Pfam PHD-finger 345 391 IPR019787 -
Glsi08g1076 623 Pfam PHD-finger 504 549 IPR019787 -
Glsi08g1076 623 SMART PHD_3 344 390 IPR001965 -
Glsi08g1076 623 SMART PHD_3 454 503 IPR001965 -
Glsi08g1076 623 SMART PHD_3 504 549 IPR001965 -
Glsi08g1076 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 554 IPR013083 -
Glsi08g1076 623 SUPERFAMILY FYVE/PHD zinc finger 503 555 IPR011011 -
Glsi08g1076 623 Gene3D - 248 392 - -
Glsi08g1076 623 ProSiteProfiles Zinc finger RING-type profile. 455 502 IPR001841 -
Glsi08g1076 623 ProSiteProfiles Zinc finger PHD-type profile. 342 392 IPR019787 -
Glsi08g1076 623 ProSiteProfiles Zinc finger PHD-type profile. 501 551 IPR019787 -
Glsi08g1076 623 MobiDBLite consensus disorder prediction 561 593 - -
Glsi08g1076 623 FunFam PHD finger protein EHD3 isoform A 232 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1076 Glsi-ChrGlsi08 7916149 7921763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1076 503 569 C2H2 Transcription Factor Family AT3G01460 41.791 5.40e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi08g1076 PHD 8.8e-14 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1228 10 8278904 8286597 Glsi08g1076 08 7916149 7921763 CCT
Glsi08g1076 08 7916149 7921763 Glsi08g1076 08 7916149 7921763 ECH