LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g1057	ATGATGGTGGTGTGCCTGATTCTATTAGCAGCCTTGTCAGCAGCTGCAGCTCAATCCCTGCCTGACTGCCTCCCCAAATGTGGAGAGCTTGAGATTCCATATCCATTTGGTGTAGGTGTACAATCTGGTACTGGGAAAAGCTGCTTCTTAGAGAAAGCGTTTAATGTCACTTGTCAAAACTCCAAATTAAAGTGGGGAAACGCGGAAATTTTAAACATATCTCTCCCCCAAGGCCAGATGGACATGTCCGTGTTTGTGTCGCGAAGGTGTTTCAATGAATCCGGAGCACCAGTAGGTGGTATTAAAACCTTTTTCAGAATGCCTTATTTCACCGTTTCTAGCAGCGAAAACAAGTTATTCACTGTTGGTTGCGACAGTTACGGCTATTTACGCAGTTTCCAGAACAATACGAGTTATGCGACCGGGTGCTTAACCCAATGTGACAGAGTTCCTAATGAGGAAAATAGTAAGACTTGTTCAGGGATTGGGTGTTGCCAGGTCGATATTCCTCTCGATGTCGACGAATGAGCATGTGCAGCCTTGATAGCTGTGTTTGTGAGCGTGTCGTGGCTGTTCTTGTTGTACCAGAAGAGGAAGCTCATCAAGCTAAAGGAGAAATTCTTTCGGCAGAATGGTGGTTTCATTTTGCTGCAACAGCTCTCTGTAAAAGAAGGCTCCTCTTCCTCCCAAACGGCTAAAATCTTCACCGCAGAGGAGTTGAAAAAGGCCACCAACGATTACCATGAGAGCTTGATCATTGGCCGCGGAGGAACTCTGGGATATTTGGACCCAGAATACATGCTAACAAACCAACTCACTGAGAAGAGCGACGTGTATAGTTTTGGAGTGGTACTTGTGGAGCTGCTAACAGGGAAGAAAGCGCTTTCATTTGACAAGCCAGAAGAGGAGAGAAGTCTTGCTATGCACTTCCTTTCTTCTTTGAAGCAGGGTCGTTTGTTCGAAATACTTGAAGTTGGCATGCTGACTGATGAAAATAAGCAGATGCTGAAGGAAGTGGGCGTGTTAGCAGCAAGGTGCTTGAGAATGAAAGGAGAGGAGAGACCTAGCATGAAGGAAGTGGCAATGGAGTTAGAGGGAATATTAAGGATGACAGGGAAGCATTCATGGGTTAACAAAGACCTTAGTTTGGAGGAAAATCAGTCATTGCTTGGTGAGACATCTGGTATTAGTGAATGTGGTGACAGCATCAATTATGGAAACACTGGGTGGGATAGCATTACAGATCAGGTGCTGATTGTCTTGGATGACGGAAGATGA	1278	0.4531	MMVVCLILLAALSAAAAQSLPDCLPKCGELEIPYPFGVGVQSGTGKSCFLEKAFNVTCQNSKLKWGNAEILNISLPQGQMDMSVFVSRRCFNESGAPVGGIKTFFRMPYFTVSSSENKLFTVGCDSYGYLRSFQNNTSYATGCLTQCDRVPNEENSKTCSGIGCCQVDIPLDVDEXACAALIAVFVSVSWLFLLYQKRKLIKLKEKFFRQNGGFILLQQLSVKEGSSSSQTAKIFTAEELKKATNDYHESLIIGRGGTLGYLDPEYMLTNQLTEKSDVYSFGVVLVELLTGKKALSFDKPEEERSLAMHFLSSLKQGRLFEILEVGMLTDENKQMLKEVGVLAARCLRMKGEERPSMKEVAMELEGILRMTGKHSWVNKDLSLEENQSLLGETSGISECGDSINYGNTGWDSITDQVLIVLDDGR	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g1057	425	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	14	257	IPR045274	GO:0007166
	Glsi08g1057	425	Pfam	Wall-associated receptor kinase galacturonan-binding	23	79	IPR025287	GO:0030247
	Glsi08g1057	425	Pfam	Protein kinase domain	256	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g1057	425	SUPERFAMILY	Protein kinase-like (PK-like)	252	369	IPR011009	-
	Glsi08g1057	425	Gene3D	Transferase(Phosphotransferase) domain 1	222	386	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g1057	Glsi-ChrGlsi08	7744699	7747420	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g1057	230	425	Receptor kinase-like Gene Family	AT1G21240	41.546	1.37e-39	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Glsi08g1057		Pkinase	8e-11	CL0016