Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1037 ATGGCACTAAGGTATATCACAGCGCAGAATATGGGGAAGTCGCTGTTGGTTGAAACTGTGAGACAAGAAAGAAAGCCACTAAATAATTTGCCAACGGACTGCGAACGTACTGTTGATGTCAAATATTACGGTGTGGGTTATGATGATGAAAGTGGTGGGTTGCTTAGGTTTCTTAGGAAAGTGAGAGAAAAGGTGGCCTCCATGGACGATTCATCATCAGCAGCTGAGGACACCAAGACTTGCCCTCGCGGTCACTGGAGGCCTGCCGAGGATGAAAAACTCCGCCAACTTGTCCTACAATATGGTGCCCAGAACTGGAATTCTATAGCTGAGAAGCTTCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGGAGGCCATTTACAGAAGAGGAAGAAGAAAGGCTACTTGCGGCTCACCGAATTCACGGGAACAAGTGGGCTCTCATAGCCAGGCTTTTCCCAGGTCGAACTGATAACGCTGTGAAGAATCACTGGCATGTTATAATGGCAAGGAAGCAAAGAGAACAATCTAAGTTATGCGGGAAGAGAAGCTTCCAAGATGTTTATAATGATTCTAACACTTCCTCATCCAATAATTTCCCAGACAAAATATCAAATTCTCCAGATGTATTTAGCTCGAGAGTTGGTTTAGAGAATGTCAGATTCTTTGACTTCCGAAACCTTGATCATAAAGATAGGATATTTGCAGATTCTTGGAATTTTGCATCCACAGCAACCTCCTCAAATGGTTCTCCTGTGGTGGATTCATTTATAGAGGAAGGCAGAGTTTACTATAACTCTCACTCCAATAATTACATATCAGAGTTATCAAAAAGTTCAGATAGATTTCTTTACAGAATTTATCCGAAGTCTTCATCAGTCAGCAGCACATTCGCGATTCCTACCCACAGGAAGATAGTTCCAACTCCAAGTCCTTTCGGACACTTCGTTTATGGTGATGATGGAAGGAGAAAGAGGGACTTAGCCAGTTACTGCGGTAACTCCACATTCACAAAGTTGCAGGCTTCTACGGAGCAAGGGCAAGCAGATGAGCCAAATGAACACAAAGAAGTTCCTTTTATTGATTTTCTTGGTGTGGGTGTCTCTTCGTAG 1146 0.4293 MALRYITAQNMGKSLLVETVRQERKPLNNLPTDCERTVDVKYYGVGYDDESGGLLRFLRKVREKVASMDDSSSAAEDTKTCPRGHWRPAEDEKLRQLVLQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNTSSSNNFPDKISNSPDVFSSRVGLENVRFFDFRNLDHKDRIFADSWNFASTATSSNGSPVVDSFIEEGRVYYNSHSNNYISELSKSSDRFLYRIYPKSSSVSSTFAIPTHRKIVPTPSPFGHFVYGDDGRRKRDLASYCGNSTFTKLQASTEQGQADEPNEHKEVPFIDFLGVGVSS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1037 381 CDD SANT 146 177 IPR001005 -
Glsi08g1037 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 129 IPR017930 -
Glsi08g1037 381 FunFam MYB transcription factor 83 134 - -
Glsi08g1037 381 Gene3D - 137 197 - -
Glsi08g1037 381 SUPERFAMILY Homeodomain-like 82 176 IPR009057 -
Glsi08g1037 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 184 IPR017930 -
Glsi08g1037 381 SMART sant 134 182 IPR001005 -
Glsi08g1037 381 SMART sant 82 131 IPR001005 -
Glsi08g1037 381 ProSiteProfiles Myb-like domain profile. 130 180 IPR001005 -
Glsi08g1037 381 ProSiteProfiles Myb-like domain profile. 83 129 IPR001005 -
Glsi08g1037 381 Gene3D - 83 134 - -
Glsi08g1037 381 FunFam MYB transcription factor 136 208 - -
Glsi08g1037 381 PANTHER MYB PROTEIN-RELATED 83 212 - -
Glsi08g1037 381 Pfam Myb-like DNA-binding domain 86 146 - -
Glsi08g1037 381 CDD SANT 86 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1037 Glsi-ChrGlsi08 7623237 7629241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1037 81 190 MYB Transcription Factor Family AT1G17950 83.636 8.07e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g1037 Myb_DNA-bind_6 1.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1037 08 7623237 7629241 Glsi10g1250 10 8443826 8449713 CCT
Glsi08g1037 08 7623237 7629241 Glsi08g1037 08 7623237 7629241 ECH