Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1032 ATGTGTCTTCTATGGTACGCCACTACCGATCAGCCCAATCCTAAGCTACCAGTGAAGCACGTCTCTGACAAAGGCTTGCCCACTTCGAAGCTGAAGAAGCTGCCTAGAATCACCGAAAAAGAGTTGATCATGGGTTATGAATGTGCCGTGTGCCTTTATGAGATTGTGAATGACCAACGGGCTCGACTAGTTCCTGGTTGCAACTACGCATTCCATGTGGAATGCGCTGACACTTGGCTTTCCAAGTATCGTCTCTGTCCAATTTGTAGAGGCAAGCTCAATCCTCAACTTTTCAATTCTTCTGAAAATCCACGCTGA 318 0.4686 MCLLWYATTDQPNPKLPVKHVSDKGLPTSKLKKLPRITEKELIMGYECAVCLYEIVNDQRARLVPGCNYAFHVECADTWLSKYRLCPICRGKLNPQLFNSSENPR 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1032 105 Pfam Ring finger domain 47 90 IPR001841 -
Glsi08g1032 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 96 IPR013083 -
Glsi08g1032 105 SMART ring_2 48 89 IPR001841 -
Glsi08g1032 105 ProSiteProfiles Zinc finger RING-type profile. 48 90 IPR001841 -
Glsi08g1032 105 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 100 - -
Glsi08g1032 105 SUPERFAMILY RING/U-box 39 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1032 Glsi-ChrGlsi08 7594352 7594669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1032 3 103 C3H Transcription Factor Family AT5G42200 46.729 3.74e-27 96.3