Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1021 ATGTCTAGCACGACTGGTCAGGTTATCAAGTGCAAAGCCGCCGTAGCCTGGGAAGCAGGCAAGCCACTAGTGATTGAGGAGGTTGAGGTAGCGCCGCCACAGGCTGGAGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCATACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTCCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGCGAGGGTGTGACTCATCTGAAACCAGGAGATCATGCCCTCCCTGTATTCACAGGGGAGTGTGGAGAATGCTCGCATTGTAAGTCAGAGGAGAGCAACATGTGCGACCTGCTCAGGATCAACACTGATAGAGGTGTTATGATTAATGATGGCAACACAAGGTTCTCTAAAAATGGACAGCCCATATACCACTTTGTTGGAACCTCCACATTCAGCGAATACACTGTTGTCCATGCTGGATGTGTTGCAAAGATCAACCCTGCTGCCCCACTCGACAAAGTTTGTGTTCTCAGCTGTGGCATATGCACTGGACTTGGTGCTACTGTAAATGTCGCTAAGCCAAAACCTGGTTCTTCTGTTGCCGTCTTCGGACTGGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCCAGAATCATTGGGGTTGATTTAGTTTCCAGCCGTTTTGAAGAAGCCAAAAAGTTTGGGGTTAATGAGTTCGTGAACCCAAAAGATCATGACAAACCTGTACAGCAGGTAATTGCTGAAATGACCAATGGAGGTGTGGATCGTGCTGTTGAATGTACTGGGAGCATCCAGGCCATGATCTCAGCATTCGAATGTGTCCACGATGGTTGGGGTGTTGCTGTACTGGTTGGTGTGCCAAATAAGGATGATGCATTCAAAACTCATCCCGTGAATTTCTTGAATGAGAGGACTCTTAAGGGTACCTTCTATGGTAACTACAAACCCCGCACCGATCTACCTTCTGTGGTAGAGAAGTACATGAAAGGGGAGCTGGAAATAGAGAAATTCATCACTCACTCTGTCCCATTCTCGGAGATTAACAAAGCATTTGACTACATGCTGAAAGGGGAATCCATCAGGTGCATCATTCGCATGGGAGAGTAA 1143 0.4803 MSSTTGQVIKCKAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECSHCKSEESNMCDLLRINTDRGVMINDGNTRFSKNGQPIYHFVGTSTFSEYTVVHAGCVAKINPAAPLDKVCVLSCGICTGLGATVNVAKPKPGSSVAVFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMKGELEIEKFITHSVPFSEINKAFDYMLKGESIRCIIRMGE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1021 380 CDD alcohol_DH_plants 9 377 - -
Glsi08g1021 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Glsi08g1021 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Glsi08g1021 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Glsi08g1021 380 Gene3D - 19 370 - -
Glsi08g1021 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Glsi08g1021 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Glsi08g1021 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Glsi08g1021 380 Gene3D - 183 321 - -
Glsi08g1021 380 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Glsi08g1021 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Glsi08g1021 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1021 Glsi-ChrGlsi08 7525409 7527453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1021 1 370 Monolignol Biosynthesis Gene Families AT1G72680 24.665 1.66e-14 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1021 08 7525409 7527453 Glsi08g1021 08 7525409 7527453 ECH