Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1012 ATGTCAAGCAATGCAATAACTCTTTTTATCTTGTTTTTTAACATCTCCATGTTTCCGGCCATCTTTGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTTTCAACATTCAATTCCTCTGATTCTGCTGCTGCCTTCTCTTCATGGAACCAAAACCACAAAAATCCTTGCAAATGGGATTATATAAAATGTTCCAAGGATGGTTTTGTTTCAGATATCATAATAACGTCCATTAATCTTCGTAACAGCTTCCCCACACAGCTCCTTTCCTTTGCTCACCTTACCACTCTTGTCATCTCAAATGGAAATCTTAGTGGTGAGATTCCAAGTTCAGTAGGCAACTTGTCCTCCCTGATTACTTTGGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCAGGAGAAATAGGAATACTATCTAATCTGCAATGGTTATTGTTGAATTCAAATTCCTTACAAGGTGGAATTCCAACAGAAATTGGAAATTGTTCAAAGCTTCGGCAGCTCGAACTATTTGACAACCAGCTCTCTGGTAAGATTCCTGTAGAAATAGGCCAGTTGAGGGATATTGAAACGTTTCGAGCAGGTGGAAATTCGGGTATTTGCGGTGAAATTCCAAAGCAGATATCGAACTGCAAAGCTCTGGTTTTTCTGGGCCTTTCAGATACTGGGGTCTCAGGGGAGATTCCACCAAGTATAGGAGAACTTGCGAATCTGAAGACAATTTCAGTTTACACAGCAAATCTCACAGGTCATATTCCACCAGAGATTCATAACTGCTCAGCCTTGGAGAATTTGTTTCTATATCAAAACCAGCTTTCTGGGAATATTCCTTTAGAATTGGGTTCCATGAAAAGCCTCAGGAGGATATTACTATGGCGGAACAATCTAACTGGTCCAATTCCAGAAAGTTTGGGAAATTGTACAGGTCTAATGGTTATAGATTTCTCATTAAATTCTCTGGAAGGTCAGCTTGCCGTTACTCTCGGAAACTTGCTCGCATTGGAGGAGTTTCTTCTGTCTGATAACAACATTTCTGGAGAGATACCTTTTTATATTGGTAACTTTTCCAGGTTGAAGCAACTAGATTTTGATAACAACAGATTCTCTGGCGAGATTCCACCTGTTGTTGGGCAACTGAAGGAACTAACACTATTCTTTGCCTGGCAGAATCAGCTCCAAGGAAGCATACCAATAGAACTATCAAACTGTGAGAAACTTGAAGCGGTTGATCTTTCACACAACTTCCTCACCGGGTCAATTCCAAATTCTCTCTTTCATCTGGAGAATTTAACTCAACTATTGTTGATATCAAATAAACTTTCAGGTCAGATTCCACCAGATATTGGCAGTTGTAGCAGCTTGATCAGGTTACGCCTGGGATCAAACAACTTCACTGGTCAAATTCCTCCAGAAATAGGTCTTCTAAGAAGTTTGAGCTTTCTTGAATTGTCAGATAATCTACTTAGTAGAGATATTCCCCACCAGATTGGTAATTGCGCTCAGCTAGAAATGCTTGACTTGCACAAAAATGAACTGCAAGGAACAATTCCTTCCTCCTTTGCATTCCTAGTTGGGCTCAATGTTTTAGATCTTTCTGCCAATAGAATAACTGGCAGCATTCCTGAGATTTTGGGCAAGCTTACATCTTTAAATAAGTTAATAATCAGTAGAAACTATATCACAGGTTTGATCCCTCCGTCACTGGGCCTTTGTAAGGATCTGCAGTTGCTGGATATAAGCAACAATGGAATAACTGGTTCCATTCCGAACGAGATTGGTCACTTGCAAGGATTGGATATTATCTTGAACTTGAGTTGGAATTCTCTAACTGGCCAAATTCCAGAGAGTTTCTCAAATCTTTCAAAACTTTCCAACTTGGACCTCTCCCACAACAAGCTCACAGGCAGTCTCGTTGTCCTCGGTAGTCTTGACAATCTAGTGTCTCTGAATGTCTCCTACAATTGTTTTTCTGGTTCTCTTCCTGATACAAATTTCTTCCGGGATCTACCTGCTGCTGCATTTGCTGGTAACCCTGAGCTCTGCATTAACAAGTGCCACGTAAGTGGAAATCACAAAGGCATCAAATCAGTAAGAAATGTTATTATCTACACTTTTCTTGGTGTCATTTTGACAGCTATTTTTGTGGCTTTCGGAGTGATTTTAGCTCTCAGAATTCATTGGGCCAAATTTGGGAGGAAATTTGATGAGGAAGGCGAAATGGAATGGGCTTTCACTCCATTTCAAAAAATTAACTTCTCCATCAATGACATTGTCACGAAGTTATCGGATTCGAACATTGTAGGAAAGGGCTGCTCAGGAATTGTTTATCGGGTTGAGATTCCCATGCAACAGGTTATTGCAGTGAAGAAGCTATGGCCGATAAAAAAGGACGAGCCACCAGAAAGAGATCAGTTTTCTACAGAGGTTCGGACTCTAGGATCAATAAGACATAAAAACATAGTGAGACTTTTGGGATGCTTTGATAATGGAAGAACTAGATTGCTCATGTTTGATTATATCTGTAATGGGAGTTTGACTGGATTGCTCCATGAAAAGAGGTTGTTCTTAGACTGGGACGCAAGGTATAAAATCATATTGGGAGCAGCTCATGGTTTAGAATATCTCCATCATGATTGTATCCCTCCAATCGTCCATCGGGATATTAAGGCTAACAACATCTTGGTAGGACCACAATTTGAAGCTTTTCTTGCAGATTTTGGGCTTGCAAAACTAGTAAATTCCTCAGAGTGTTCAAGAGCCTCTGCTATAGTTGCAGGTTCTTATGGTTACATAGCTCCTGAATACGGATACAGTTTGAGGATCACAGAGAGGAGTGACGTGTACAGTTACGGTGTGGTAGTCATAGAGGTGTTAACAGGAATGGAGCCAACTGATAATAGGATTCCAGAGGGCGAAAACATAGCGAGCTGGGTTAGCAGGGAAATCCGAGAGAGGAAAGGAGACTTGACCGCAATTCTGGAACAGCAGCTAATATCACAATGTGGAACAAGAACCCCAGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTTTGTGTAAACCCATCCCCAGAAGAACGACCTACCATGAAAGATGTAACGGCAATGCTCAAGGAGATCATGCATGATAATGACAATTGCGAGAAGCCAAATTTTCTCCATAAAGGATTAGTTATCAACCCAAAAGCAGCAGTTCACTGCTCAAGTTTCTCCAGATCACGTGAACCCTTAATGGAATCATCATCTTCCACTTCTCCATAG 3264 0.4105 MSSNAITLFILFFNISMFPAIFALNQEGLSLLSWLSTFNSSDSAAAFSSWNQNHKNPCKWDYIKCSKDGFVSDIIITSINLRNSFPTQLLSFAHLTTLVISNGNLSGEIPSSVGNLSSLITLDLSFNALSGTIPGEIGILSNLQWLLLNSNSLQGGIPTEIGNCSKLRQLELFDNQLSGKIPVEIGQLRDIETFRAGGNSGICGEIPKQISNCKALVFLGLSDTGVSGEIPPSIGELANLKTISVYTANLTGHIPPEIHNCSALENLFLYQNQLSGNIPLELGSMKSLRRILLWRNNLTGPIPESLGNCTGLMVIDFSLNSLEGQLAVTLGNLLALEEFLLSDNNISGEIPFYIGNFSRLKQLDFDNNRFSGEIPPVVGQLKELTLFFAWQNQLQGSIPIELSNCEKLEAVDLSHNFLTGSIPNSLFHLENLTQLLLISNKLSGQIPPDIGSCSSLIRLRLGSNNFTGQIPPEIGLLRSLSFLELSDNLLSRDIPHQIGNCAQLEMLDLHKNELQGTIPSSFAFLVGLNVLDLSANRITGSIPEILGKLTSLNKLIISRNYITGLIPPSLGLCKDLQLLDISNNGITGSIPNEIGHLQGLDIILNLSWNSLTGQIPESFSNLSKLSNLDLSHNKLTGSLVVLGSLDNLVSLNVSYNCFSGSLPDTNFFRDLPAAAFAGNPELCINKCHVSGNHKGIKSVRNVIIYTFLGVILTAIFVAFGVILALRIHWAKFGRKFDEEGEMEWAFTPFQKINFSINDIVTKLSDSNIVGKGCSGIVYRVEIPMQQVIAVKKLWPIKKDEPPERDQFSTEVRTLGSIRHKNIVRLLGCFDNGRTRLLMFDYICNGSLTGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVNSSECSRASAIVAGSYGYIAPEYGYSLRITERSDVYSYGVVVIEVLTGMEPTDNRIPEGENIASWVSREIRERKGDLTAILEQQLISQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIMHDNDNCEKPNFLHKGLVINPKAAVHCSSFSRSREPLMESSSSTSP 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1012 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Glsi08g1012 1087 Pfam Protein kinase domain 766 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1012 1087 ProSiteProfiles Protein kinase domain profile. 763 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1012 1087 Gene3D Phosphorylase Kinase; domain 1 747 841 - -
Glsi08g1012 1087 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Glsi08g1012 1087 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
Glsi08g1012 1087 Pfam Leucine Rich Repeat 603 622 IPR001611 GO:0005515
Glsi08g1012 1087 Gene3D Transferase(Phosphotransferase) domain 1 842 1057 - -
Glsi08g1012 1087 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Glsi08g1012 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Glsi08g1012 1087 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Glsi08g1012 1087 SMART LRR_typ_2 477 501 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 357 381 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 622 644 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 549 573 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 140 164 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 285 309 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 645 678 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 116 138 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 525 548 IPR003591 -
Glsi08g1012 1087 SMART LRR_typ_2 429 453 IPR003591 -
Glsi08g1012 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Glsi08g1012 1087 SUPERFAMILY L domain-like 40 394 - -
Glsi08g1012 1087 SMART serkin_6 763 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1012 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Glsi08g1012 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Glsi08g1012 1087 SUPERFAMILY Protein kinase-like (PK-like) 760 1058 IPR011009 -
Glsi08g1012 1087 Gene3D Ribonuclease Inhibitor 396 691 IPR032675 -
Glsi08g1012 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Glsi08g1012 1087 PRINTS Leucine-rich repeat signature 622 635 - -
Glsi08g1012 1087 PRINTS Leucine-rich repeat signature 119 132 - -
Glsi08g1012 1087 SUPERFAMILY RNI-like 315 663 - -
Glsi08g1012 1087 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 494 1039 - -
Glsi08g1012 1087 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Glsi08g1012 1087 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Glsi08g1012 1087 Gene3D Ribonuclease Inhibitor 185 395 IPR032675 -
Glsi08g1012 1087 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Glsi08g1012 1087 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1012 Glsi-ChrGlsi08 7479687 7483019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1012 22 1076 Receptor kinase-like Gene Family AT5G56040 46.956 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g1012 Pkinase 3.2e-40 CL0016