Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1005 ATGCTGCTGTTTCAGCAAGCCTATACCACCTCATCTTTCATCACTACCAATGCTCCATCATTGCAACGACCCAGTTTGGACTTTCACGCTTTACCTGCTTCTGTGGTCCTTGACCCAATGTTTCCAGGAGTGAGAGATTTCTTGGTGATCTTCATTGTTGATGCAAAGATAATGGGAAAGACAGAGGATGTGCTCATTGTCTCAGCAGCCTTGACGATTGGAGTAATGTTGTTTTGCGTTGGAGCGGAGCCCGTGGATGATAGACAAGCGTTGCTCGACTTCTTTCACAACATGGGTCACTCTCGTCTTCTCAACTGGGACGAGAACTCTTCTGTCTGCAATAGCTGGAGAGGAGTGAGCTGCAACGGTGACCAATCCAAAGTAATAGCCCTCCGATTACCCGGAGTTGGATTAAGCGGTCCAATCCCACCTAACACCCTAACTCGCCTCTCAGCACTCCAGACTATGAGTCTTAGATCCAATAGCATAACAGGTCCTTTTCCTTCTGGTTTCTCTGAGCTTAAGAATTTAACCTACCTTTATATTCAGTTTAACAAGTTTTCTGGTCCATTGCCATCGGATTTTTCAGTTTGGAATAATCTTACTGTTGCTAATTTATCCAACAATTCTTTTAATGGGAGCATTCCTTCTTCAATTTCAAATTTGACTCATCTCACTTCTTTAGTCCTTGCCAACAACTCGCTTTCGGGTGAAATTCCTGATCTCAATATTCCTAGCCTGCAAGAGCTCAATTTAGCCAACAACGGCCTTAGTGGGATTGTGCCTAAATCCCTTCTGAGATTCCCAAATTGGTCCTTTTCTGGGAATAATCTTACATCTGCAAATGCACTTACTCCAGCTTTTTCAGTTCAACCACCGAATTCTCAACCAACAAAGAAAACCTCAAGACTTAGTGAACCTGCATTATTGGGTATCATCGTTGGTAGTTGTGCGCTGGGATTTGTGGTGATTGCAGCTTTTATGCTTGTGTGCTGCTATGACAAAGGAGGTGAAAACGGGCTACCAGTAATGAAGTCCCAGAAAAAACAAGTCTCTCTAAAAAAAGATGCTTCTGAAAGTCAAGACAAAAACAAGATCGTCTTCTTTGAGGGTTGCAATCTTGCGTTTGACCTGGAGGACCTGTTGAGAGCATCTGCTGAGGTGCTTGGGAAGGGGAGCTATGGCACAGCATATAAGGCTGCTCTAGAGGATGCAACCACGGTGGTGGTTAAGAGACTGAAGGAAGTCACCATTGGAAAACGTGAGTTTGAACAGCAGATGGAGGTGGTGGGGAGGATTAGGCACGACAATGTGGCTGCATTAAGGGCATATTACTATTCCAAGGAGGAGAAACTTATGGTCTATGATTACTATGAACAGGGTAGCGTTTCCGCTATGTTGCACGGTAGAAGAGGGGAAGGAGGAACTTCTCTAGACTGGGTTAGCCGGGTGAGAATTGCAATTGGAGCAGCAAGAGGCATTGCTCACATCCATGCTCAACATGGAGGGAAACTCATCCATGGAAACATAAAATCCTCAAACATCTTCCTCAACTCTCAAGGATATGGTTGTCTTTCTGATATCGGTTTGGCAACATTGATGAGTCCAATATCCCCACAAGCACTGAGGAATGCAGGCTACCGTGCCCCGGAAGTAACAGACACCCGAAAAGCAACCCACGCATCTGATGTCTACAGTTTTGGGGTATTGCTACTTGAGCTTCTGACAAGAAAATACCCCAGACATGCCACAGGAAGAGAGGAGGTTGTCCACCTGGTTAGGTGGGTTAATTCTGTGGTCAGAGAGGAGTGGACAGCAGAGGTGTTTGATGTTGAGTTACTGAGATATCCAAATATAGAGGAAGAAATGGTGGATATGTTACAATTAGGAATGGCATGTGTGGTGAGGATACCAGAGCAGAGACCAAAAATGCAAGATGTTGTGAGAATGGTGGAGGAAATTCGTCGAGCAAATACTGGGAATCGACCATCAACTGAATCTAGATCTGAAGTTTCTACCCCAACCCCTCATGCTGTTGACATACCTTCTTCCTCTATTCCTCAGTGA 2067 0.449 MLLFQQAYTTSSFITTNAPSLQRPSLDFHALPASVVLDPMFPGVRDFLVIFIVDAKIMGKTEDVLIVSAALTIGVMLFCVGAEPVDDRQALLDFFHNMGHSRLLNWDENSSVCNSWRGVSCNGDQSKVIALRLPGVGLSGPIPPNTLTRLSALQTMSLRSNSITGPFPSGFSELKNLTYLYIQFNKFSGPLPSDFSVWNNLTVANLSNNSFNGSIPSSISNLTHLTSLVLANNSLSGEIPDLNIPSLQELNLANNGLSGIVPKSLLRFPNWSFSGNNLTSANALTPAFSVQPPNSQPTKKTSRLSEPALLGIIVGSCALGFVVIAAFMLVCCYDKGGENGLPVMKSQKKQVSLKKDASESQDKNKIVFFEGCNLAFDLEDLLRASAEVLGKGSYGTAYKAALEDATTVVVKRLKEVTIGKREFEQQMEVVGRIRHDNVAALRAYYYSKEEKLMVYDYYEQGSVSAMLHGRRGEGGTSLDWVSRVRIAIGAARGIAHIHAQHGGKLIHGNIKSSNIFLNSQGYGCLSDIGLATLMSPISPQALRNAGYRAPEVTDTRKATHASDVYSFGVLLLELLTRKYPRHATGREEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVDMLQLGMACVVRIPEQRPKMQDVVRMVEEIRRANTGNRPSTESRSEVSTPTPHAVDIPSSSIPQ 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1005 688 Pfam Leucine rich repeat N-terminal domain 86 122 IPR013210 -
Glsi08g1005 688 ProSiteProfiles Leucine-rich repeat profile. 246 267 IPR001611 GO:0005515
Glsi08g1005 688 Pfam Protein kinase domain 386 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1005 688 MobiDBLite consensus disorder prediction 658 688 - -
Glsi08g1005 688 ProSitePatterns Protein kinases ATP-binding region signature. 389 420 IPR017441 GO:0005524
Glsi08g1005 688 FunFam Probable inactive receptor kinase RLK902 84 243 - -
Glsi08g1005 688 Gene3D Ribonuclease Inhibitor 197 317 IPR032675 -
Glsi08g1005 688 ProSiteProfiles Protein kinase domain profile. 383 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1005 688 Pfam Leucine Rich Repeat 246 270 IPR001611 GO:0005515
Glsi08g1005 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 458 665 - -
Glsi08g1005 688 MobiDBLite consensus disorder prediction 655 688 - -
Glsi08g1005 688 Gene3D Transferase(Phosphotransferase) domain 1 458 674 - -
Glsi08g1005 688 SUPERFAMILY L domain-like 99 279 - -
Glsi08g1005 688 Gene3D Phosphorylase Kinase; domain 1 347 457 - -
Glsi08g1005 688 SUPERFAMILY Protein kinase-like (PK-like) 387 652 IPR011009 -
Glsi08g1005 688 FunFam pollen receptor-like kinase 1 352 457 - -
Glsi08g1005 688 Pfam Leucine rich repeat 142 187 IPR001611 GO:0005515
Glsi08g1005 688 PANTHER OS05G0588300 PROTEIN 75 665 - -
Glsi08g1005 688 Gene3D Ribonuclease Inhibitor 86 196 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1005 Glsi-ChrGlsi08 7442409 7445550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1005 76 675 Receptor kinase-like Gene Family AT4G23740 56.290 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi08g1005 Pkinase 2.3e-32 CL0016