Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1001 ATGGAACAAAGCATCCTATGCAAATATACGGTGCATCACAGCGTTACGAAGAAGCTCACGAAGCCCGTGGCAGGTAGGAAGGCCTCTGATGCGCAGAATCCGATAGAGCCCCGAGTAGTACGGATATCCGTGACTGATCCAGATGCCACAGACTCTTCCAGCGATGAGGAAGGACAGTTTTTCGGTCGTCCGAGAGTGAAGCGGTATGTGAACCAGATTGACATCGAAACTAGCTTGAAAAACGTGGCGGCTCCCAATGCCCGGAAGAGACCCGCCGGAGAGACCACGTCTTGCCGGCGGCCGGTGAAGGTTTCGACGACGAACAACGGCAGGAAGTTCCGAGGGGTACGGCAAAGACCATGGGGGAAATGGGCGGCGGAGATTCGAGATCCCGCGAAACGTGTACGGCTCTGGCTAGGTACGTATGATACAGCGGAGGAAGCAGCGATGGTATACGATAATGCGGCGATTAAGCTGAGAGGTCCCGACGCTTTAACAAACTTCGTAACGCCACCGCCGAGGGAAAATGCGGAAGAAGCCGAAGAGGGAGTGAAGCCGGAAATGAAAGTGGCAGTGAAGTCAGAAGCTTCCGTTTCCGGCTACTATTCCGGCGACGAGTCTCATAATCTTTCATCGCCCAAATCGGTGCTGCAATTCAGAAGCAATTCTAGTGAGGAAACTGAGCCGCAGAAGCCGAATGACGCGGAAGAAGCGTGTGAGTGTGAGGCAGAGGCGGAAGCAGTTGCAGGGGAAGAGGTATTGGGGGAGTGTGAAGGGGAGACGAGCTTGCAGGAGGAGAAGAGGGAGGAGTATTGGAGGGTTGAAATGCCAGTGTGGGATGATAATGTACTATTGAATTTCGCAACGCCAGAATACTCGTCGGTGCTGTTTGAAGAACCATCGCAGTTGTTCGGCGAAACGACGACGGTTCTGGCTGATGATACTGTAGCGGACTCTCACTTTGATTTTGAAACAATGTACTCGCCATCGAGCTTGTGCCAAGCGGACGATTACTTCCAAGACATATTGTTGGGGTCAGACCCTCTGGTGGTGCTCTGA 1059 0.5316 MEQSILCKYTVHHSVTKKLTKPVAGRKASDAQNPIEPRVVRISVTDPDATDSSSDEEGQFFGRPRVKRYVNQIDIETSLKNVAAPNARKRPAGETTSCRRPVKVSTTNNGRKFRGVRQRPWGKWAAEIRDPAKRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPPRENAEEAEEGVKPEMKVAVKSEASVSGYYSGDESHNLSSPKSVLQFRSNSSEETEPQKPNDAEEACECEAEAEAVAGEEVLGECEGETSLQEEKREEYWRVEMPVWDDNVLLNFATPEYSSVLFEEPSQLFGETTTVLADDTVADSHFDFETMYSPSSLCQADDYFQDILLGSDPLVVL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1001 352 MobiDBLite consensus disorder prediction 201 239 - -
Glsi08g1001 352 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Glsi08g1001 352 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 257 - -
Glsi08g1001 352 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Glsi08g1001 352 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Glsi08g1001 352 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Glsi08g1001 352 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Glsi08g1001 352 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Glsi08g1001 352 MobiDBLite consensus disorder prediction 99 113 - -
Glsi08g1001 352 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Glsi08g1001 352 MobiDBLite consensus disorder prediction 201 226 - -
Glsi08g1001 352 MobiDBLite consensus disorder prediction 82 114 - -
Glsi08g1001 352 CDD AP2 112 168 IPR001471 GO:0003700|GO:0006355
Glsi08g1001 352 SUPERFAMILY DNA-binding domain 112 169 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1001 Glsi-ChrGlsi08 7417693 7418751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1001 7 226 AP2-EREBP Transcription Factor Family AT4G27950 49.107 1.06e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g1001 AP2 8.7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1001 08 7417693 7418751 Glsi08g1001 08 7417693 7418751 ECH