Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0993 ATGGATGACAGCTTTTCTGATATTCTTGAAGACAAAGAATTTGGTGGAGACGACCTCTTTGCCATATTGGAGAGCCTAGAGGACTTCACCGATTTTCCTCCCATTGATGAAGCTGTGTTCAGCTCCCAAAAGTCAACCTCTTCAAGTGCTCTACAAGAGTCTGAAACTGAACTTGAAACTTCACCCAAAAGCAAGAGACAGAAGCTTGGGCGGACGACCAGCTCGTCAGAGGAACCAAATACAGATGGGCAACCAAGGGTATCTCATATTACTGTGGAGCGCAACCGCAGAAAGCAAATGAATGAGCATTTGTCCGTCTTGAGGTCTCTTATGCCTTGCTTTTATGTCAAACGTGGAGACCAAGCATCGATAATTGGAGGTGTGGTTGACTACATCAACGAGTTGCAGCAGGTTCTACAATCCCTGGAAGCCAAGAAACAGAGAAAAGTTTACTGTGAAGTGCTAAGCCCTAGGCTAGTCTCAAGTCCAAGGCCTTCCCCACTTAGTCCTAGAAAACCGCCTCTGAGCCCTAGACTAAACTTGCCCATTAGTCCAAGGACTCCACAACCAGGTAGCCCTTACAAGCCCAGGTTGCAGCAGCAAGCCTCTCTTGAACCATCTCCTACATCTTCTGCTTCCTCCATAAACGATAATATCAATGAGCTTGTTGCCAATTCCAAGTCTGCCATGGCCGACGTGGAAGTCAAGTTTTCAGGTCCACACGTTCTTTTGAAAACTGTATCTCATCGAATTCCCGGCCAAGCTCTGAAAATCATATCAACCCTTGAAGACCTAGCGCTCGAAATCCTTCATGTGAGCATCAACACTGCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAGGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 930 0.4591 MDDSFSDILEDKEFGGDDLFAILESLEDFTDFPPIDEAVFSSQKSTSSSALQESETELETSPKSKRQKLGRTTSSSEEPNTDGQPRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYCEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYKPRLQQQASLEPSPTSSASSINDNINELVANSKSAMADVEVKFSGPHVLLKTVSHRIPGQALKIISTLEDLALEILHVSINTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0993 309 PANTHER TRANSCRIPTION FACTOR FAMA 15 308 IPR044283 GO:0003700|GO:0010052
Glsi08g0993 309 MobiDBLite consensus disorder prediction 163 192 - -
Glsi08g0993 309 Coils Coil 128 148 - -
Glsi08g0993 309 SMART finulus 90 141 IPR011598 GO:0046983
Glsi08g0993 309 MobiDBLite consensus disorder prediction 58 72 - -
Glsi08g0993 309 MobiDBLite consensus disorder prediction 160 215 - -
Glsi08g0993 309 Gene3D - 75 149 IPR036638 GO:0046983
Glsi08g0993 309 MobiDBLite consensus disorder prediction 193 215 - -
Glsi08g0993 309 MobiDBLite consensus disorder prediction 73 88 - -
Glsi08g0993 309 FunFam Transcription factor SPEECHLESS 76 150 - -
Glsi08g0993 309 MobiDBLite consensus disorder prediction 40 96 - -
Glsi08g0993 309 MobiDBLite consensus disorder prediction 40 57 - -
Glsi08g0993 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983
Glsi08g0993 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 153 IPR036638 GO:0046983
Glsi08g0993 309 CDD bHLH_AtFAMA_like 88 158 - -
Glsi08g0993 309 Pfam Helix-loop-helix DNA-binding domain 86 136 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0993 Glsi-ChrGlsi08 7349019 7350349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0993 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 54.203 1.23e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi08g0993 HLH 1.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0993 08 7349019 7350349 Glsi08g0993 08 7349019 7350349 ECH