Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0982 ATGTTGAGGCAAATATTCAGAAATCAACCTCAGACACTGAATTCTAAGTCAACAAAAGCCCGCCTTGGATCTACAGGGGCAAGCATTTCAAAAGCTTATAACGGTCAAAATTCACAATTCAAGTCATGTAATTTAGTACCTCAAACTGAAACCCTAGAGTCTGATGTATCCGAATCTAACGAACAAGTTCAGAGCAAAGGCACAAGCTTTTGGACAGTAACGATGATAAGTTATGAAAAAGTAAAATTACCGAATTGGAGAAAGCCAGTGACGTTAATGAGTTTGAATCTGAGACGACCATCCCCTGATCACCATTTTGTTGGGTTTCAGGATTGGAATTCAGAGAGCAGTTATGAGAGCCAATACCCTGCTGCAAATAACATGACACACTCTGGGAGAATTAGAACTTCGCTAAAATCAGTTCCTACAAAATTTCAAAGGGGCTTGGAATCTGGTTCTGAGAGGATAAAGAGATTTGGAAATTCATTCAAATATTTTCCCTATAATAGTGTTCTGGCTAGAAGTTTTAGTTCTAGGAAGAAAATTCTTGATCCACAGGGCTCATTCCTTCAGAAGTGGAACAAGATATTTGTATTATCATGTCTTATTGCTGTATCACTAGATCCTTTGTTCTTTTATGTCCCTTTAATTGATGATGAGAAAAAATGCCTTTCATTGGACCACAAGATGGAGGTTACAGCTACAGTTCTAAGATCTTTCTCTGATATTTTTTATATAATCCACATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTAGTTGAAGATGCTTGGGCCATAGCGAAGAGGTATCTGTCATCATACTTTTTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGTGATTTTGATTATCATTCCAAAGATAAGTGGCTTTAAATCACTGAACACGAAGAACTTGCTGAAATTTGTTGTTTTCTTCCAATATGTGCCAAGGATCTTACGAGTTGTTCCTTTATATAAAGAAATTACAAGGACCTCTGGCATTCTCACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAACAAGCCTGTCGAAGAAGTAATACCTGTCACAAGGCAAACCTGTATTGTAGTAATCGTGATGGGTTGGGCAGTACTATAACATTCTTGAATGCTTCTTGCCCAGTACAAGTGGCAAATACTACACTCTTTAATTTTGGAATATTTCTTGATGCACTTCAGTCTGGTGTTGTGGAGTCAAGAGATTTCCCCCAAAAGTTTTTTTACTGTTTTTGGTGGGGCCTTCGAAATCTGAGTTCTCTTGGTCAGAACCTGGAAACAAGTACATATTTTTGGGAAATCTGCTTTGCTGTTTTCATTTCCATCTTTGGTTTGGTATTATTTTCCCTCCTCATCGGAAATATGCAGACATATTTGCAGTCAACAACTACAAGATTGGAGGAGATGAGAGTGAAAAGGACAGATGCAGAACAGTGGATGTCTCATCGGTTGCTCCCTGATAGTCTGAGAGAACGAATCAGACGACATGAACAATACAAATGGCAAGAAACCAGTGGTGTTGATGAAGACAATTTGATCCGTAATCTTCCTAAAGATTTAAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTCTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTGTTGGATGCAATGTGTGACCGTCTCAAGCCAGTCCTTTACACAGAAGAAAACTACATTGTTCGGGAAGGAGACCCCGTTGATGAGATGCTCTTTATAATGCGAGGCAAGCTATTGACGGTGACAACTAATGGTGGAAGAACAGGCTTCTTTAACTCCGAATTCCTCAAGGGTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCTTTAGACCCCCATTCCTCATCCAACCTTCCTATCTCAACCAGGACTGTCCAAACCCTTTCAGAAGTTGAAGCCTTTGCTCTAAAAGCTGATGACTTGAAGTTTGTAGCATCTCAATTCCGACGTCTTCACAGTAAGCAGCTTCGTCACACTTTTAGGTTCTACTCACAGCAATGGCGTTCATGGGCTGCGTGTTTCTTACAAGCAGCCTGGCGGCGCTATACTAAGAAGAAGCTTGAAGAGTCTCTACGGGAAGAGGAGAATAGGCTGCAAGATGCATTGGCCAAGGCAGGTGGAAGCTCACCTAGTCTAGGCGCTACAATATATGCTTCCAGATTTGCTGCTAATGCACTTCGAGCTTTACGTCGTAATGGCACAAGGAAAACAAGGGTGCCAGAGAAATTACCACCCATTCTGCTTCAAAAGCCTGCGGAACCTGATTTTACGGCTGATGAGCAATAG 2445 0.4102 MLRQIFRNQPQTLNSKSTKARLGSTGASISKAYNGQNSQFKSCNLVPQTETLESDVSESNEQVQSKGTSFWTVTMISYEKVKLPNWRKPVTLMSLNLRRPSPDHHFVGFQDWNSESSYESQYPAANNMTHSGRIRTSLKSVPTKFQRGLESGSERIKRFGNSFKYFPYNSVLARSFSSRKKILDPQGSFLQKWNKIFVLSCLIAVSLDPLFFYVPLIDDEKKCLSLDHKMEVTATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIIPKISGFKSLNTKNLLKFVVFFQYVPRILRVVPLYKEITRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQQACRRSNTCHKANLYCSNRDGLGSTITFLNASCPVQVANTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLETSTYFWEICFAVFISIFGLVLFSLLIGNMQTYLQSTTTRLEEMRVKRTDAEQWMSHRLLPDSLRERIRRHEQYKWQETSGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEENYIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKGGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFLQAAWRRYTKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNGTRKTRVPEKLPPILLQKPAEPDFTADEQ 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0982 814 Gene3D Jelly Rolls 583 703 IPR014710 -
Glsi08g0982 814 FunFam Cyclic nucleotide-gated ion channel 1 583 701 - -
Glsi08g0982 814 Gene3D - 196 509 - -
Glsi08g0982 814 Coils Coil 737 757 - -
Glsi08g0982 814 CDD CAP_ED 585 716 IPR000595 -
Glsi08g0982 814 Gene3D Helix hairpin bin 511 576 - -
Glsi08g0982 814 Pfam Cyclic nucleotide-binding domain 606 696 IPR000595 -
Glsi08g0982 814 ProSiteProfiles cAMP/cGMP binding motif profile. 585 669 IPR000595 -
Glsi08g0982 814 FunFam Cyclic nucleotide-gated ion channel 1 512 576 - -
Glsi08g0982 814 SMART cnmp_10 585 716 IPR000595 -
Glsi08g0982 814 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 172 809 - -
Glsi08g0982 814 Pfam Ion transport protein 193 512 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi08g0982 814 SUPERFAMILY cAMP-binding domain-like 514 707 IPR018490 -
Glsi08g0982 814 MobiDBLite consensus disorder prediction 786 814 - -
Glsi08g0982 814 SUPERFAMILY Voltage-gated potassium channels 184 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0982 Glsi-ChrGlsi08 7250865 7268404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0982 106 813 Ion Channels AT5G53130 77.496 0.0 1133