Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0977 ATGAATATTTACATACTCATCCCCTTTTTCCTCTTCCTTCTTCCTCCAACACAGCTCCCAGTGGTGGCAAGCACAGAAACATGCTTAAACGCGGTTTGCCAGAGAAAGAACCCGGTAATTCGATTCCCGTTCCGGATACAGGGGCAACAGCCAAGGTCATGTGGTTATCCTGGTTTTAATGTAAGGTGCAGTAAAGAAGGGCAAACACTACTAAAGCTGCCTTACGCTGGAGGAGAATTCAGTATCCAAGGAATAGACTATGCCACACAAGAATTATGGGTTAATGATCCCAAAAACTGCCTTCCAAAACGCATTCTCTCCCTAAACCTCTCCGGATCTCCATTTAATGCCGTTTATTATCAAGATTTTACGTTCTTCAACTGTTCCTTGGAGTATCTCAAGTATCGGTATAACCCAATAGCTTGTCTTAGCGATTCCAACTACACTGTTTTTGCTACATCTTCCAGAAAGGTGTTTGTGTACCTGTCGGCGGTTTGTACTTTGGTTAGTACAGTGACAGTCCCAGTTCAGTGGCCGTTTTACGACCACATATTGTCGTCTGACCTCAGCGACGACCTCCGCCTGTCGTGGGATTCGCCGCCGTGCGGGAGGTGTGAGTCGCGTGGTGGACGGTGTGAGTTCAAGAGTAATTCCACTTTTGAGATTGGCTGTTCCTATATTCCTTCTGAAGGGATTTCGCGGGGTGCACGTTATGCTATAAGCATAGGCATTGGTGTAACGGCTGTCTTGTGCTTTGTTGGCATGCTGTGTTACTTGTGTGGCCGGTGTAGGGCCCGCATATGGGCCCCCGAGACAGTTGCAGATTTCAACTCCATTGTCGGTCCTCCAGCCCCCAGCGGTTCGGGCCTTGATGGACCCACAATTCAGTCGTACCCGAAAATAGTGGTGGGTGAGAGTGGTGGACTACTGAAGCCCGAAGACAAGACCTGCCCAATATGCTTGAGCGAGTACAGGCCCAATGAGACGCTGAAGAGCATACCTCCGTGCCGCCATTGTTTTCATGCTGATTGCATTGATGCATGGCTTCCACTGAATGCGTCCTGCCCACTTTGCCGCACATCTCCCCAGAAGTTACTGCCCACAGATGATCCCGCACGTCCATAA 1125 0.4933 MNIYILIPFFLFLLPPTQLPVVASTETCLNAVCQRKNPVIRFPFRIQGQQPRSCGYPGFNVRCSKEGQTLLKLPYAGGEFSIQGIDYATQELWVNDPKNCLPKRILSLNLSGSPFNAVYYQDFTFFNCSLEYLKYRYNPIACLSDSNYTVFATSSRKVFVYLSAVCTLVSTVTVPVQWPFYDHILSSDLSDDLRLSWDSPPCGRCESRGGRCEFKSNSTFEIGCSYIPSEGISRGARYAISIGIGVTAVLCFVGMLCYLCGRCRARIWAPETVADFNSIVGPPAPSGSGLDGPTIQSYPKIVVGESGGLLKPEDKTCPICLSEYRPNETLKSIPPCRHCFHADCIDAWLPLNASCPLCRTSPQKLLPTDDPARP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0977 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 364 IPR013083 -
Glsi08g0977 374 CDD RING-H2_EL5-like 317 359 - -
Glsi08g0977 374 SUPERFAMILY RING/U-box 310 364 - -
Glsi08g0977 374 Pfam Wall-associated receptor kinase C-terminal 161 226 IPR032872 -
Glsi08g0977 374 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Glsi08g0977 374 Pfam Ring finger domain 316 359 IPR001841 -
Glsi08g0977 374 SMART ring_2 317 358 IPR001841 -
Glsi08g0977 374 Pfam Wall-associated receptor kinase galacturonan-binding 28 96 IPR025287 GO:0030247
Glsi08g0977 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 362 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0977 Glsi-ChrGlsi08 7213718 7216088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0977 26 362 C3H Transcription Factor Family AT2G46495 36.735 1.33e-67 215