Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0963 ATGCTTTTGAGGTTACCACTAATCGAAGGCATATCTTTGGAATCGCTAGCTTTTCACACCATCCGTAATTTGGTAAAACATAAACAAAGTGAGCTAAAAGGCACAGAAATAAAAAGAATACAAACAGGAAACTGCCCCTCTCTTTCTCACAACGATATGGACTATGGCAGACTCGGACCCTCCGAACCCGGTGGCTCCTCCCGGCGCTCAGACGTTCCAATCATTGCTAAACCACCTTCCTCCTCACCCCTCACCTCTTCCAATAAGAAGAAACTCATCTTGTTGTCAGTTCTCGCCGTCATTTTAATTGTCGCCTCTGCCATCTCCGCCGTGTTCGTGATCGGTATCAGGGCCCGTGCTTCCGGTGAGAACGGCCCGGATATCCGTGGGAAGCCTACCCAGGCAATCTCAAGGACCTGCAGTAAAACCCAGTTCCCCACTCTCTGTGTCAACTCACTCCTCGAATTTCCGGGTTCCACCGCGGCGTCGGAGCAGGAACTGGTCCACATTTCATTCAACATGACCCTGCAGCACCTGAGCAAAGCTCTTTACTCCTCCACCGGGATCTCCTTCGCCCAGATGGATCCTCGTGTACAGTCGGCGTACGAGGACTGCCTGGAGCTCCTGGAGGACTCGGTGGACGCCCTAGCACGGTCCCTCACCTCCGTGGCGCCCTCGCCGTCGGACGGCAGCATCAGACCAGCTGGGTCATCCGAGGACGTGCTGACGTGGCTCAGTGCCGCACTCACCAATCAGGACACGTGTACGGACGGGTTCACGGACATGAGCGGGAACGTGAAGGATCAGATGGGCAACAATTTGAAGGACTTGTCGGAGCTGGTGAGCAATTGCCTGTCGATTTTCTCGGCCAGCGGCAGTGACGATTTCTCAGGGGTGCCCATACAGAACAGAAGAAGATTGATGGGAGAGAATGCCGAAATTTCAGGTAATTTCCCAAAATGGTTAGGCAGACGAGATAGGAGATTGTTGAGTTTGCCGGTGTCGGCGATACAAGCAGATATAATCGTGTCGAAGGACGGGAATGGAACATTGAAGACGATCGCAGAGGCTATTAAGAAGGCGCCCGAGCACAGTAGCCGGCGGTTCATTATCTACGTCAGGGCAGGAAGGTACGAAGAGAAAAATTTGAAGGTGGGGAGGAAGAAAACCAATTTGATGTTCATAGGGGACGGGACGGGTAAGACCATCATCACAGGTAGAAGAAATGTAATGGATGGCTTGACGACATTCCACACAGCTTCCTTCGCTGCAACTGGCGCCGGCTTCATCGCACGAGACATCACGTTCGAGAACTATGCCGGGCCGAGCAAGCACCAAGCAGTGGCCCTCCGCATCGGAGCCGACCACGCGGTCGTCTACCATTGCAACATCCTCGGATACCAAGACACGTGCTACGTGCATTCCAACCGTCAATTCTTTCGCGAATGTAACATTTACGGAACCGTGGATTTCATTTTTGGTAATGCTGCCGTGGTTTTTCAAAACTGCAGCCTTTATGCTCGCAAGCCCATGGCCCAACAAAAGAATACCATTACGGCCCAAAACCGAAAAGACCCAAATCAGAACACGGGTATATCAATCCACAATTGTCAGATCCTACCTGCACCAGATCTCAAGCCAGTAAAGGGAAGCATCCCCACCTATCTTGGTCGTCCGTGGAAATTATATTCTAGAACCGTCTACATGATATCATATATGGGCGATCACATACATCCGCGCGGATGGCTGGAGTGGAATGCCACATTTGCTTTAGACACATTGTACTATGGGGAGTACATGAATTATGGGCCGGGTGCAGCCATCGGAGAACGGGTGAGATGGCCCGGGTACCGGGTCATCACATCCCCCGTGGAGGCAAATCGATTCACGGTGGCCCAATTCATATCGGGCTCATCATGGTTGCCGTCGACTGGAGTAGCATATTTGGCTGGGCTATCCACATGA 1965 0.5211 MLLRLPLIEGISLESLAFHTIRNLVKHKQSELKGTEIKRIQTGNCPSLSHNDMDYGRLGPSEPGGSSRRSDVPIIAKPPSSSPLTSSNKKKLILLSVLAVILIVASAISAVFVIGIRARASGENGPDIRGKPTQAISRTCSKTQFPTLCVNSLLEFPGSTAASEQELVHISFNMTLQHLSKALYSSTGISFAQMDPRVQSAYEDCLELLEDSVDALARSLTSVAPSPSDGSIRPAGSSEDVLTWLSAALTNQDTCTDGFTDMSGNVKDQMGNNLKDLSELVSNCLSIFSASGSDDFSGVPIQNRRRLMGENAEISGNFPKWLGRRDRRLLSLPVSAIQADIIVSKDGNGTLKTIAEAIKKAPEHSSRRFIIYVRAGRYEEKNLKVGRKKTNLMFIGDGTGKTIITGRRNVMDGLTTFHTASFAATGAGFIARDITFENYAGPSKHQAVALRIGADHAVVYHCNILGYQDTCYVHSNRQFFRECNIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHNCQILPAPDLKPVKGSIPTYLGRPWKLYSRTVYMISYMGDHIHPRGWLEWNATFALDTLYYGEYMNYGPGAAIGERVRWPGYRVITSPVEANRFTVAQFISGSSWLPSTGVAYLAGLST 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0963 654 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 134 289 IPR035513 -
Glsi08g0963 654 CDD PMEI-like_3 140 290 - -
Glsi08g0963 654 Pfam Pectinesterase 340 637 IPR000070 GO:0030599|GO:0042545
Glsi08g0963 654 Gene3D - 334 652 IPR012334 -
Glsi08g0963 654 ProSitePatterns Pectinesterase signature 2. 485 494 IPR033131 -
Glsi08g0963 654 SMART PMEI_2 131 287 IPR006501 GO:0004857
Glsi08g0963 654 Pfam Plant invertase/pectin methylesterase inhibitor 135 287 IPR006501 GO:0004857
Glsi08g0963 654 SUPERFAMILY Pectin lyase-like 335 651 IPR011050 -
Glsi08g0963 654 FunFam Pectinesterase 132 291 - -
Glsi08g0963 654 NCBIfam pectinesterase inhibitor domain 124 288 IPR006501 GO:0004857
Glsi08g0963 654 FunFam Pectinesterase 334 652 - -
Glsi08g0963 654 MobiDBLite consensus disorder prediction 43 86 - -
Glsi08g0963 654 Gene3D Invertase/pectin methylesterase inhibitor family protein 133 291 IPR035513 -
Glsi08g0963 654 PANTHER PECTINESTERASE 103 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0963 Glsi-ChrGlsi08 7095667 7100479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0963 53 653 Carbohydrate Esterase AT5G53370 66.612 0.0 829