Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0958 ATGATTTTGATTACTGGGCATTTCTTTTATCCATCGATTGTGGGAGGTTTTGGTGACTGGATGGACTTGGACAACATTGAGTGTGTCTCATCCTCGGATGGCATGGATGAGGATGAGATCCAACATCATAGTCTGCATCCTCACCCCCATCATCACTCTGAGTTTTCATCCGCAAAGCCTCGCAATGGCGGCACCAATATGGGCCCTACGCTCATTGCTCCGGCAACCAGTGTCCACGAATTGCTGGAATGCCCCGTCTGTACCAATTCAATGTACCCACCAATTCATCAGTGCCACAATGGGCACACACTGTGTTCCACATGTAAAACGAGGGTGCACAACCGATGTCCCACATGCAGACAAGAGCTTGGAGATATTAGGTGTTTGGCACTGGAGAAGGTGGCTGAATCACTTGAATTACCTTGCAAATACTACTCCCTCGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGGCATTATGCAATTTCAGACCATACAATTGTCCTTACGCTGGATCAGAGTGTTCTGTTGTTGGGGACATCCCTTTCCTCGTTGCACATTTGAGGGACGACCATAAGGTAGACATGCATACAGGATGTACATTTAACCATCGTTATGTGAAGTCAAATCCTCGTGAAGTGGAGAATGCGACTTGGATGCTCACAGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCCCCTGTTTACATGGCATTTCTTCGTTTCATGGGCGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAAGTTGGGGCGAATAGCAGGAAACTAATCTGGGAGGGTACTCCAAGAAGTATCCGAGATAGCCATCGTAAAGTCAGGGATAGCCATGATGGTCTCATTATCCAACGAAATATGGCCTTATTTTTCTCTGGTGGGGATAGGAAGGAGCTTAAGCTCAGAGTTACTGGAAGAATATGGAAAGAACAACAGAATCCGGATGCAGGGGTGTGTATACCAAATCTTTGTAGCTGA 1041 0.4601 MILITGHFFYPSIVGGFGDWMDLDNIECVSSSDGMDEDEIQHHSLHPHPHHHSEFSSAKPRNGGTNMGPTLIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANSRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0958 346 SUPERFAMILY RING/U-box 75 126 - -
Glsi08g0958 346 FunFam E3 ubiquitin-protein ligase SINAT5-like 193 325 - -
Glsi08g0958 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 190 IPR013083 -
Glsi08g0958 346 Pfam Seven in absentia protein family 126 325 IPR018121 GO:0005737|GO:0006511|GO:0007275
Glsi08g0958 346 SUPERFAMILY TRAF domain-like 137 329 - -
Glsi08g0958 346 FunFam E3 ubiquitin-protein ligase SINAT3 136 192 - -
Glsi08g0958 346 MobiDBLite consensus disorder prediction 39 66 - -
Glsi08g0958 346 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 63 331 - -
Glsi08g0958 346 FunFam E3 ubiquitin-protein ligase SINAT3 31 135 - -
Glsi08g0958 346 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 191 325 IPR008974 GO:0005515
Glsi08g0958 346 CDD RING-HC_SIAHs 82 120 - -
Glsi08g0958 346 ProSiteProfiles Zinc finger SIAH-type profile. 137 197 IPR013010 GO:0008270
Glsi08g0958 346 MobiDBLite consensus disorder prediction 39 57 - -
Glsi08g0958 346 CDD Sina 198 326 - -
Glsi08g0958 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 136 IPR013083 -
Glsi08g0958 346 ProSiteProfiles Zinc finger RING-type profile. 84 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0958 Glsi-ChrGlsi08 7061215 7069808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0958 54 332 C3H Transcription Factor Family AT2G41980 77.061 3.18e-163 456
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0958 08 7061215 7069808 Glsi08g0958 08 7061215 7069808 ECH