Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0956 ATGGGGAAGAAAGGAAGCAGCTGGTTCTCGTCGGTGAAGAAAGTTTTCAAATCATCGCCTAAAGAATTGCCTGCGCCGGAGAGGAAGAAGGACCATGGAGAGAAATGGCAGCATGAAGCGCCAGAGGTGGTGTCTTTTGAGCATTTTCCTGCAGAGAGTTCCCCTGATGTCACCAATGAGAATAGTATTACATCGACGCCTGTGACTGAAGATAGAAACCATGCCATTGCTGTTGCCGCTGCTACTGCTGCAGCTGCAGAAGCTGCGGTTGCCGCTGCTCAAGCAGCAGCCAAAGTTGTTCGATTGGCAGGTTATGGACGCCACTCCAAGGAAGAAAGAGCAGCAATCCTTATTCAATCATACTACAGAGGCTACCTAGCTCGACGTGCACTCCGTGCTTTGAAGGGATTGGTGAGGCTGCAAGCACTTGTGAGGGGGCATAATGTGCGGAAGCAAGCGCAAATGACAATGCGCTGTATGCAAGCATTAGTTCGAGTACAGGCAAGAGTAAGAGCTCGCAGATTCCAGTTGACCGATGACAAGCATCAGAAGAGAGTGGATGAGTACGAGGAGAGAGAATTTGAGGAACAACAGCGAAAACCTATGAGCCCCATGAAAGGGTTAGACATGGATAGATGGGACAATAGGCGTCAAAGTAGCCAGAAGGTCAAGGAAAATGATCTGAGGAAACATGAAGCAGCAATGAAGAGGGAGAGAGCTCTTGCGTATGCTTTCAACTATCAGCAACAGCAGAAGCCATTTCTGCACGCGGACCCGAATGCCGATGATGTCTATGCCAATGAGCGTGAAAAGGCCCAATGGGGTTGGAACTGGTTGGAGCGTTGGATGTCATCACAACCACACAATGTTAGGCACATGGGGCCGCGAGAGACTTCTTACAAGACCCTTGCTACTACGACCACTACCACTACAGATGACATGTCTGAAAAGACGGTGGAAATGGACATCGTTGCAGCTCCGGGCTCAACCAACTTCAACATGGGCCTGATGAACCAAGAGTTTCTTGATTCTAGCCCAATTTCCAATAGGCAACACCACCGACAACTCAGTGCCAGTGTACCTAGCTATATGGCTCCGACCCAGTCTGCAAAAGCCAAGGTACGAAGTCAAGGCCCAATCAAGCCTCGTGGTTCACCCGGACCTCAGTGGAACTCATCGACCAAGAAAGGGTCTGGTATTGGGTCGGGCTGTGATTCCTCCAGTTCTGGCGGAGGAACGTCAAATTACAGGTTTCCAAAGAGCCCAAGCCCGAAAATTAATGGGATCCGCCCACAATCTAGACGGATTGCAGGTGGCAGCCCGGATTACATTGGCATTGAGGATTGGGCCCTCCCTCTTGGAGCCCATGGTTGGGCATGA 1380 0.5058 MGKKGSSWFSSVKKVFKSSPKELPAPERKKDHGEKWQHEAPEVVSFEHFPAESSPDVTNENSITSTPVTEDRNHAIAVAAATAAAAEAAVAAAQAAAKVVRLAGYGRHSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRFQLTDDKHQKRVDEYEEREFEEQQRKPMSPMKGLDMDRWDNRRQSSQKVKENDLRKHEAAMKRERALAYAFNYQQQQKPFLHADPNADDVYANEREKAQWGWNWLERWMSSQPHNVRHMGPRETSYKTLATTTTTTTDDMSEKTVEMDIVAAPGSTNFNMGLMNQEFLDSSPISNRQHHRQLSASVPSYMAPTQSAKAKVRSQGPIKPRGSPGPQWNSSTKKGSGIGSGCDSSSSGGGTSNYRFPKSPSPKINGIRPQSRRIAGGSPDYIGIEDWALPLGAHGWA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0956 459 MobiDBLite consensus disorder prediction 1 42 - -
Glsi08g0956 459 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Glsi08g0956 459 MobiDBLite consensus disorder prediction 386 421 - -
Glsi08g0956 459 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Glsi08g0956 459 Pfam IQ calmodulin-binding motif 112 132 IPR000048 GO:0005515
Glsi08g0956 459 Pfam IQ calmodulin-binding motif 138 153 IPR000048 GO:0005515
Glsi08g0956 459 MobiDBLite consensus disorder prediction 20 42 - -
Glsi08g0956 459 SMART iq_5 110 132 IPR000048 GO:0005515
Glsi08g0956 459 SMART iq_5 133 154 IPR000048 GO:0005515
Glsi08g0956 459 MobiDBLite consensus disorder prediction 347 441 - -
Glsi08g0956 459 MobiDBLite consensus disorder prediction 187 230 - -
Glsi08g0956 459 PANTHER IQ-DOMAIN 5-RELATED 1 396 - -
Glsi08g0956 459 MobiDBLite consensus disorder prediction 347 374 - -
Glsi08g0956 459 Gene3D - 109 162 - -
Glsi08g0956 459 Pfam Protein of unknown function (DUF4005) 345 386 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0956 Glsi-ChrGlsi08 7042429 7045649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0956 1 425 IQD Protein Family AT3G49260 52.954 7.53e-109 328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0956 08 7042429 7045649 Glsi08g0956 08 7042429 7045649 ECH