Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0946 ATGGCCTTGTCAAGCCCACAAACGCAAAGATTCCTTTTAACCAAGCTCCATAGCCGTTCCATCTCCAATACCATCCGCAGAAATAGCTTTACCACTACAAGCAGAGGGCGATGCTGCTCTGCCATAGCCATTGATACCCCATCGTCTTTAACTGACGTAGCAGGCATAAGATGGGGATCCATAGCTTTGCAGGGTCTCCGAGAAGAGATGGAGGATGACATTCTTGTTCGGCCTGGTGGCCTTGATGGCTTCTCTTTCGCAGCTGTATTTGATGGGCATGGAGGATTTTCCTCCGTCAAGTTCCTCAGGGATGAGCTGTACAAAGAGTGTCTTGCAGCCTTACAAGGTGGGTTACTACTCGGTAAAAAGGATTTCCAAGCCATTAAAGTAGCATTACAGGAGGCATTTGTCAATGCCGACGCAGGTTTGTTGAAACGGCTCGAAATGAATGGAGAGGAGGACGAATCTGGTGCTACAGCGACTGCAGTGTTCGTTGGAGATAATATGCTGCTCATTTCGCACGTTGGTGACTCATCTGTGGTTCTAAGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCGCACCGACCATATGGGAGCAATAAGGCTTCTCTTGAAGAAATTAAAAGAATCAGAGATGCAGGTGGATGGATTGTCAATGGTAGAATTTGCGGAGACATTGCTGTATCTCGCGCATTTGGGGACTTACGATTCAAAACAAAGAAGAATGAGATGCTGAGAAAAGGGGTTGAGGAAGGAAGATGGTCAGAAAAATTTATTTCTCGTGTACAGCTCAAAAGTGACTTGGTCATTGCATGCCCTGATATTTATCAAGTGGCTCTAGGATCAGATGCAGAATTTATAGTATTAGCATCTGATGGCTTATGGGATTATATGAGCAGCTCAGAGGCAGTTTCTTTTGTGAGGGATCAACTTCGACAACATGGAAATATTCAGCTAGCTTGTGAAGCGCTTGCTCAAGCAGCTCTGGAACGACGCACACAGGATAATGTCAGCATTATAATTGCTGATTTTGGGCGAACAGACTGGCAGAATTTGCCTCTGCAGCAACAAAACATTATTTACGAGATGGTCCAAGCTTTTGCCACCGTTGGTATCGTGTCACTCGGAATTTGGTTTTCGTCCCAGATTTTATAA 1158 0.4525 MALSSPQTQRFLLTKLHSRSISNTIRRNSFTTTSRGRCCSAIAIDTPSSLTDVAGIRWGSIALQGLREEMEDDILVRPGGLDGFSFAAVFDGHGGFSSVKFLRDELYKECLAALQGGLLLGKKDFQAIKVALQEAFVNADAGLLKRLEMNGEEDESGATATAVFVGDNMLLISHVGDSSVVLSRSGKAEVLTSPHRPYGSNKASLEEIKRIRDAGGWIVNGRICGDIAVSRAFGDLRFKTKKNEMLRKGVEEGRWSEKFISRVQLKSDLVIACPDIYQVALGSDAEFIVLASDGLWDYMSSSEAVSFVRDQLRQHGNIQLACEALAQAALERRTQDNVSIIIADFGRTDWQNLPLQQQNIIYEMVQAFATVGIVSLGIWFSSQIL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0946 385 SUPERFAMILY PP2C-like 54 346 IPR036457 -
Glsi08g0946 385 PANTHER PROTEIN PHOSPHATASE 2C 46 343 IPR015655 GO:0004722|GO:0006470
Glsi08g0946 385 Pfam Protein phosphatase 2C 59 338 IPR001932 -
Glsi08g0946 385 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Glsi08g0946 385 Gene3D - 56 351 IPR036457 -
Glsi08g0946 385 SMART PP2C_4 47 343 IPR001932 -
Glsi08g0946 385 CDD PP2Cc 56 345 IPR001932 -
Glsi08g0946 385 FunFam Protein phosphatase 2C 57 56 352 - -
Glsi08g0946 385 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0946 Glsi-ChrGlsi08 6976991 6980114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0946 1 322 PP2C-type Phosphatase Gene Family AT4G27800 60.479 1.19e-145 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0946 08 6976991 6980114 Glsi08g0946 08 6976991 6980114 ECH