Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0939 ATGGGTAGCTTCAGCGAAGACGAAGAATGCCGATTTTTCGATGCTCAAGAGGATGTTTCGTCGATTGCTGATGCAAAACTCGATGGCACTGACACCCCTGACTCTAATTCTAGTTCTGACTGGGGCGTGTCGAATGGTTTGGAATATGAAGTGTGGATTCGAAGCCCTAGGAGTGTGCGGGAGCGTCGAAGTAAGTTCATGAAGTGGATGGGGCTGAGTTTGGATCGAATTACCCTAGAAAATTCAGTAGATGTATGTAGTCCTGAGCGGGAAGAAGATATGGATAGAATTAAAGATAGCAGTGGGAGCGTGACTGTAACCTCTGATTCTGCAGAGGAGTTTTTTTCAATTGGGTCATCAATGTCTTGTTGGTCTACTATAAATTCTTCGGACGAGCTTGGTTCAGTGGAGAGGTTGGCATGCAAAGATGAGATTTTGAACGTGAAAATTGGTTGTAATTTGGATCAGGTGGATCAGCATGGGAAGATGAGTGGTGGTAGAGGGTTTGGATCAGATCAGTTGGTGGTTGCAGAGGAGTATGACGGTTGTGAGAAAACATCTGGGCCTTCTCCCTCTTTCCAACATATGATGGGTAAGGAGTTTGAGGATACGAATGTTTTCGGGCAGAGGAAGAAGAGGTCTAAAAGGGGTTGGTTCAGAAGATTCCGCTCAATAACATGCATGGTTGGTAGGCAAGGCGACGGGAGACAAGAAGGCAGTTGTGCTTGTGCATTCTCAGGTTGTAGGATTCAGAAAGTTAAGGTCCGCCAATGCAGGAAGCAAATAAAGGAGCTTTCAGCGCTCTATATGGGCCAAGATATTCAAGCTCATGAAGGTTCAATTTTGACCATGAAATTCAGCCCTGATGGGCAGTATCTTGCCAGTGCTGGTGAAGATAGGGTTGTGCGATTGTGGCAAGTTGTGGAAGATCAGAGATGTAATGAAATTGACATTCCAGAAGTTGACCCGTCCAGCATATACTTTACAGTGAATAATCTCTCTGAATTGACACCCCTATTTATAGATAAGGAAAAAATGAGCAGACTGAAGAGCCTAAAGAAAACATCAGATTCAGCTTGCATAATTTTCCCTCCTAAGGTCTTTCGGTTGCTGGAGAAACCATTGCATGAGTTCCATGGGCATAGCGATGAAATTTTGGATCTCTCTTGGTCAAAGAATAATTATCTACTGTCATCTTCAGTTGACAAAACTGTTCGACTATGGCGAGTGGGATATGACCATTGCATGAAAGTTTTCACACACAGTAATTATGTGACATGCATACAATTCAATCCCGTGGATGATAATTTTTTCATCAGCGGATCTATAGATGGAAAAGTGCGCATATGGGCAATTCCTGATTGTCATGTTGTTGATTGGACTGATATCAGAGAAATTGTGACAGCAGTGTGTTATCGACCTGATGGGCAGGGAGGGATCATTGGCTCCATGACAGGAAATTGTCGGTTTTACAATGTATCAGAGAATCGCTTGCAGTTGGATTCCCAGCTATGCTTAGTTGGTAAAAAGAAACCCCCTGGCAGAGGGGTAACGGGCTTTCAGTTTCTTCCACAAGATTCTGGCAAAGTTTTGGTTACTAGTGCTGATTCAGAAGTCAGAATACTTGATGGGGTTAATGTGATCGGCAAATACAAAGGCATTAATGCTGGCAGTCAACTATCTGCATCTTTTACTTCGGATGGAAAACATATTTTATCAGCCTGTGAGGACTCTAATGTATACCTATGGAACGTTAGTCAGGAAGAGTCTGGTCCCACGAAAGCTAAGAAGATTAGGTCTTGTGAACGGTTTTATTCAAATGCATCTGTTGCAGTACCATGGTGGGGTTTGAAATCTCAAAATACTGAAAATGAACCCCAATTGGATGTCTTGAATCAGAGGTCACCTCAAATTACACGTCTCAATCCACCTGCTTCTTTCTCTCTCAGTCAAGATTTTTTCTTGGAGTCTTTTCCCAAGGGATCTGCTACTTGGCCTGAGGAGAAGCTTCCTATTTCAAGTCCCAAGGCTAGAACGTCTGCAATGCATAAATCTGAATACAAATTCTTGAAATCTTCTTGCAAGAATACTTCCAGCTCTCATGCATGGGGTATGGTCATTGTGACTGCAGGCTGGGATGGGCGGATAAAATCATTCCACAATTATGGTTTACCTGCAACTGCTTCAGTGCTCATAGCTGACTCAGACGGACGACTCGGACCCGCGTCAAAGGAAGATAATGGAACATCGGCAGGCGGTTCAGGCATAGATATTCAGACTTCCCACCGTGCCTTTACCCTCCTCTCCCTGTGA 2313 0.438 MGSFSEDEECRFFDAQEDVSSIADAKLDGTDTPDSNSSSDWGVSNGLEYEVWIRSPRSVRERRSKFMKWMGLSLDRITLENSVDVCSPEREEDMDRIKDSSGSVTVTSDSAEEFFSIGSSMSCWSTINSSDELGSVERLACKDEILNVKIGCNLDQVDQHGKMSGGRGFGSDQLVVAEEYDGCEKTSGPSPSFQHMMGKEFEDTNVFGQRKKRSKRGWFRRFRSITCMVGRQGDGRQEGSCACAFSGCRIQKVKVRQCRKQIKELSALYMGQDIQAHEGSILTMKFSPDGQYLASAGEDRVVRLWQVVEDQRCNEIDIPEVDPSSIYFTVNNLSELTPLFIDKEKMSRLKSLKKTSDSACIIFPPKVFRLLEKPLHEFHGHSDEILDLSWSKNNYLLSSSVDKTVRLWRVGYDHCMKVFTHSNYVTCIQFNPVDDNFFISGSIDGKVRIWAIPDCHVVDWTDIREIVTAVCYRPDGQGGIIGSMTGNCRFYNVSENRLQLDSQLCLVGKKKPPGRGVTGFQFLPQDSGKVLVTSADSEVRILDGVNVIGKYKGINAGSQLSASFTSDGKHILSACEDSNVYLWNVSQEESGPTKAKKIRSCERFYSNASVAVPWWGLKSQNTENEPQLDVLNQRSPQITRLNPPASFSLSQDFFLESFPKGSATWPEEKLPISSPKARTSAMHKSEYKFLKSSCKNTSSSHAWGMVIVTAGWDGRIKSFHNYGLPATASVLIADSDGRLGPASKEDNGTSAGGSGIDIQTSHRAFTLLSL 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0939 770 SUPERFAMILY WD40 repeat-like 273 718 IPR036322 GO:0005515
Glsi08g0939 770 PRINTS G protein beta WD-40 repeat signature 438 452 IPR020472 -
Glsi08g0939 770 PRINTS G protein beta WD-40 repeat signature 293 307 IPR020472 -
Glsi08g0939 770 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Glsi08g0939 770 PANTHER WD REPEAT DOMAIN 44 5 725 IPR040324 -
Glsi08g0939 770 Pfam WD domain, G-beta repeat 415 450 IPR001680 GO:0005515
Glsi08g0939 770 Pfam WD domain, G-beta repeat 373 408 IPR001680 GO:0005515
Glsi08g0939 770 Pfam WD domain, G-beta repeat 275 305 IPR001680 GO:0005515
Glsi08g0939 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 307 - -
Glsi08g0939 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 410 IPR001680 GO:0005515
Glsi08g0939 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
Glsi08g0939 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 450 IPR001680 GO:0005515
Glsi08g0939 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 410 - -
Glsi08g0939 770 Gene3D - 509 738 IPR015943 GO:0005515
Glsi08g0939 770 SMART WD40_4 453 492 IPR001680 GO:0005515
Glsi08g0939 770 SMART WD40_4 412 451 IPR001680 GO:0005515
Glsi08g0939 770 SMART WD40_4 267 306 IPR001680 GO:0005515
Glsi08g0939 770 SMART WD40_4 371 409 IPR001680 GO:0005515
Glsi08g0939 770 SMART WD40_4 544 584 IPR001680 GO:0005515
Glsi08g0939 770 SMART WD40_4 503 543 IPR001680 GO:0005515
Glsi08g0939 770 SMART WD40_4 683 720 IPR001680 GO:0005515
Glsi08g0939 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 593 IPR001680 GO:0005515
Glsi08g0939 770 Gene3D - 245 508 IPR015943 GO:0005515
Glsi08g0939 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 307 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0939 Glsi-ChrGlsi08 6941782 6948556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0939 274 442 U-box Gene Family AT2G33340 22.843 9.71e-06 47.0