Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0938 ATGTCGCTCAGACGGAGGACTCATGCGCCGAAACCGGCATCGAAGTCCCCGTTAACCAGTAAATCCTCTGACTATGGCGACGTGTGCTGCGAAGAATGTGGATCCGGCCACTCGCCCGCCAAGTTGGTTCTCTGCGACAAATGTGATCGAGGATACCACCTATTCTGCCTCAGACCCATTCTGGTTTCTGTGCCCAAAGGGTCTTGGTTCTGCCCCTCTTGCTCTCAGAACAAGAAGCCCAAGGGTTTTCCTCTAGTTCAGACCAAAATCATTGATTTCTTTCGCATTCAACGGCCTCTGCAAGTTACCCAAACATCTGGTCAAGATAATCGGAAGAAAAGAAAGCGCGCTAGCAGCCTAGTGGTATCGAAAAAGAAAAGGAAACTCCTGCCGTTCTGTCCTAGTGAGGATCCTTCAAGGAGATTGGAACAGATGGCATCTCTGGCGACGGCATTGACAGCAACTAAAACAGAATTCAGCAATGAGCTTACTTACATGGCTGGAATGGCACCAAGATCAGCTAATCGTGCGGCTCTTGAACAGGGTGGAATGCAGGTTTTGTCAAAAGAAGATACTGATACCTTGAACTTCTGCAAGAGTATGATGGAAAGAGGAGAATGGCCACCCCTCATGGTTGTTTTTGATCCTCAAGAAGGGTTCACTGTTGAGGCAGATAGATCTATAAGAGACTGGACAATAATCACAGAGTATGTTGGAGATGTTGACTATTTGAGCAATCGTGAAAATGATGATGGGGATAGCATGATGACGCTTCTTTCAGCTTCTGATCCTTCACGAACGCTTGTAGTCTGTCCAGACAAACGCAGTAACATTGCTCGATTTATTAACGGCATTAACAATCACACACCGGAAGGAAAAAAGAAGCAGAACTTAAAATGCGTGAGATTTGACGTCAATGGTGAGTGTCGGGTTCTACTGGTTGCAAACAGAGACATATCAAAGGGAGAGAGATTGTACTATGACTACAATGGAAGTGAGCATGAATATCCAACTGAACACTTTGTCTAA 1029 0.4577 MSLRRRTHAPKPASKSPLTSKSSDYGDVCCEECGSGHSPAKLVLCDKCDRGYHLFCLRPILVSVPKGSWFCPSCSQNKKPKGFPLVQTKIIDFFRIQRPLQVTQTSGQDNRKKRKRASSLVVSKKKRKLLPFCPSEDPSRRLEQMASLATALTATKTEFSNELTYMAGMAPRSANRAALEQGGMQVLSKEDTDTLNFCKSMMERGEWPPLMVVFDPQEGFTVEADRSIRDWTIITEYVGDVDYLSNRENDDGDSMMTLLSASDPSRTLVVCPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLVANRDISKGERLYYDYNGSEHEYPTEHFV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0938 342 FunFam Histone-lysine N-methyltransferase ATXR5 113 342 - -
Glsi08g0938 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Glsi08g0938 342 SMART PHD_3 29 75 IPR001965 -
Glsi08g0938 342 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 107 340 - -
Glsi08g0938 342 SMART set_7 208 336 IPR001214 GO:0005515
Glsi08g0938 342 CDD SET_ATXR5_6-like 205 342 - -
Glsi08g0938 342 MobiDBLite consensus disorder prediction 1 24 - -
Glsi08g0938 342 SUPERFAMILY SET domain 200 332 IPR046341 -
Glsi08g0938 342 Pfam PHD-finger 30 76 IPR019787 -
Glsi08g0938 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 90 IPR013083 -
Glsi08g0938 342 CDD PHD_RSF1 30 74 - -
Glsi08g0938 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Glsi08g0938 342 Pfam SET domain 246 330 IPR001214 GO:0005515
Glsi08g0938 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Glsi08g0938 342 SUPERFAMILY FYVE/PHD zinc finger 24 81 IPR011011 -
Glsi08g0938 342 Gene3D SET domain 114 342 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0938 Glsi-ChrGlsi08 6931325 6933453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0938 25 91 C2H2 Transcription Factor Family AT3G01460 35.821 1.55e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi08g0938 SET 7e-05 No_clan