Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0931 ATGTTGAAGAATACTGTAGACAATCTGATTACATTATTTGGTTTTCTTTTATTATCTGTTCCTCTTGATGTCCCGGCAAGTCTTCAAAATCTGAAAGAGTATTTTACTCGAATGTCAGGTCAGTTTCTCCATCGTTCTGTTTGTTTTGTGAGAAAATGTGATGTAGCATATATGGTGAAGTTATCGAATTTGACGTTTTCATTTCTCACATTAGAAGATTTGGTTGATTTCAGCACTGTTCTGGTCGGTTTTCCTTTTTTCATGCTTGATCAGAAAATGAGTTTTGAAGAAGCGCAAGTTCATTCATCCCAACAATATATCAGTAATGAAAAGGCAAACAAAATGATTCTCCCGGCGTCGGAGCTACTTTCCCATACCATCCTTGATATATTTGATACTGTCAAAGCAGCCAACGAGGTCCCCATTCAGAGGGAGAATTTCAAGAAATTCTCAAGATACTTGGAGAAAATCTCATTGATATTGGAAGAATTATCAAAGGAAGACATACGCCATCCAAAGAGCTTGTTGGAAGATGTCCTGGGTGCTCTCAACCGTGAGGTTAAATTTGCTAAGCAGCTGGCTTTCGAGTGCAAGAGTAAAAGTGAAGTTTATCTTTTGATCAATGGCAGAAAGATTGTTAAGCGCTTGGAATATTGTACAAAAGATATTAGTCAAGCAGTGAGCGTCATCCCTCTGACCTCTTTGAACGTTTCATCTGGTCTAAACAAACAGATAAGCGAGCTATGCCAGAACATGTTGGATGCTGAATACCATGCAGATACAGCAGATGAGCAAATTTTAGAAGAAATTGAATCAGCAATACAAGAGGGGAATGCTGATCGTTCTTACGCCAATCATTTGCTAGCTCTCATTGCAAATGCTGCTGGGATCTCCACTGAGCATGCTACTTTGAAGAGAGAATTTAAAGAGCTGAAAAATGAAATGGAAAAAGCCAAGTCAAGAAAAGATATGACAGAAACTCTACACGTGGAGAAGATCATTGCATTGCTTGAGAAGGCTGACTTTATAACTTCAACCCAAGAGAAGGAGAAGAAGTACTTCGCAAAGAGAAATTCTCTGGGAAGGCGACCGTTGGAACCTCTGCAGTCATTTTACTGCCCAATCTCTCTTGATATTATGGTGGACCCTGTGGAGATTTCCTCTGGCAAGACATTTGAGAGAAGATCAATAGAGAAGTGGTTTGCAGAAGGGAACAATCACTGTCCCTTGACCATGTTGCCTCTGGATACTTCAATTCTGAGGCTCAATAAGACTCTTCGACAGTCAATTCAAGAATGGAAAGACAGGAACACCATCATTACCATTTCTAATATCAAAATGAAACTCCAAACAAATGAAGAAGAGGGAGTGCTTCAATCCTTAGACAAACTGCAGGAGCTATGCTTGGAAAAAGAGATGCATCGGGAATACCTAAAAATGGAGAATTACATTGAGATTCTTGTTGGACTCCTTGGTGCTAAAAATCGTGAAATTAGGAAGCGGGTTTTGCTCATACTGTCTTTGCTTGCAAAAGATAATGAAGAGAACAAGGAAGATATTGCTAAGGTGGATAATGCACTTGAATTAATTGTTCGCTCACTTGCACGTCATATTGGGGAAGGCAAGTTAGCGTTGGAGTTGCTACTGGAGTTAGCAAGAAGTAAAGTGGTGCGTGACCTCATAGGAAACGTTCAAGGAAGCATACTACTACTGGTGACAATGTTAAGCAGTGATGACAATGAAGCAGCCAAAAATGCATATGATCTACTGGGGAACCTGTCTTTCCTTGATCACAATGTTATACAAATGGCAAAGGCAAATTATCTCGCACCTTTGCTGCAGAACCTTTCTTCAGGATCAGAAAAAAGGAGGATAATAATGACTGAAACTCTATCAGAAATTGCATTGACTGATCGGAATAAATTAGCTATAATCAAAGATGGGGTACTGCAGCCCCTTCTTCAATTACTCTCAAATAATGATCTGAAAATCAAGGAAGTTGCTGTCAAAGCTCTCCTAAAGCTATCAACCTTGCCAGAGAATGGCCTGCAGATGATTAGGGAGGGTGTTACTGAACCACTATTTGAACTGCTATATCGTCACAGTTTACAGTCACCAGATCTGCGTGAACGGGTAGCTGCCATGATAATGCATCTTGCCATATCAACCACTCACCAAAAAGCTGATGAAGAACAGGTTTCATTGTTAGATTCTGAGGAAGATATACTTAAACTCCTCTCTCTTATTTCCTTAACAGGACCTGACATACAAAGCAAGATTCTTAAAGCTTTCCAGGCAATGTGCCAATCTCCTTCTGGTTTCACTATCAGATCAACGCTGAGACAGCTCTCAGCTGCCCAATTATTGGTTCACTTGTTAGAGCTTAATAACCAGGCAGTGCGGCCAAATACCGTTAAGTTGTTCTATTCCATCACAGAAGACGGTGATTGTAGCAGCTATTCATCACATGTAACTGAAAGGTTCATTAAGATCTTGCTTACCATCATTGAGGTATCTGATGATGCACAAGAGGTTGTCGCTGCTATGGGTATCATCTCTAGACTTCCACAGGAGTCACATGTAACCCAGTGGCTTCTAGATTCTGGAGCACTTCAAACGATTAAGGCTTGTCTTACAGATCAAAATAGACATTCCTCACGCAAAATACAAGTAATAGAGAATTCTGTCCAAGCTCTTAGCCGATTTTCTGTCTCAACAAATCTGGAGTGGCAGAAGAGAGTAGCTCAAGAAGGAATCATCCCAGTGTTGGTGCAATTGCTGGTTTCTGGAACACCTTGGTCCAAACAAAATGCTGCCATTTCAATCAAGCAGTTTTCAGAAAATTCATACCACTTGAGCAGGCCAATAAAGAAGCAGGGTATATTCACATGCTGCCTACTAGCCCATGAAGTTGGTTGCTCAGCACATCTAGGCACATGTACTGTTGAATCTTCATTCTGCATTTTACAAGCCAATGCTTTGGAGCCCCTTGTGAGCATGCTTGCAGAGCAAGAGGTTGGAACATGTGAAGCTTCCTTAGATGCACTTTTGACATTGCTTAATGGTGAAATACTGCAGAGTGGAAGTAAGGTGCTTGCAGAGGCAAATGCTATTGCTCCAATGATAAAATTACTGAGTCTTCCTGCTGCCAGGTTGCAGGAAAAAACTCTTGTTGCTTTAGAACGAATTTTTCAATCAGATGAGATGAAGAGTAAGTATAAATCTATGGCCACAATGCTGTTAGTCGATATTACGCAGAGCAAAGATAGTAGTTTGAGAAGTCATGCTGCCAAAGTCCTTGCTCAATTGGATGTACTTGATAAACAGTCTTCTTATTTTTGA 3342 0.4042 MLKNTVDNLITLFGFLLLSVPLDVPASLQNLKEYFTRMSGQFLHRSVCFVRKCDVAYMVKLSNLTFSFLTLEDLVDFSTVLVGFPFFMLDQKMSFEEAQVHSSQQYISNEKANKMILPASELLSHTILDIFDTVKAANEVPIQRENFKKFSRYLEKISLILEELSKEDIRHPKSLLEDVLGALNREVKFAKQLAFECKSKSEVYLLINGRKIVKRLEYCTKDISQAVSVIPLTSLNVSSGLNKQISELCQNMLDAEYHADTADEQILEEIESAIQEGNADRSYANHLLALIANAAGISTEHATLKREFKELKNEMEKAKSRKDMTETLHVEKIIALLEKADFITSTQEKEKKYFAKRNSLGRRPLEPLQSFYCPISLDIMVDPVEISSGKTFERRSIEKWFAEGNNHCPLTMLPLDTSILRLNKTLRQSIQEWKDRNTIITISNIKMKLQTNEEEGVLQSLDKLQELCLEKEMHREYLKMENYIEILVGLLGAKNREIRKRVLLILSLLAKDNEENKEDIAKVDNALELIVRSLARHIGEGKLALELLLELARSKVVRDLIGNVQGSILLLVTMLSSDDNEAAKNAYDLLGNLSFLDHNVIQMAKANYLAPLLQNLSSGSEKRRIIMTETLSEIALTDRNKLAIIKDGVLQPLLQLLSNNDLKIKEVAVKALLKLSTLPENGLQMIREGVTEPLFELLYRHSLQSPDLRERVAAMIMHLAISTTHQKADEEQVSLLDSEEDILKLLSLISLTGPDIQSKILKAFQAMCQSPSGFTIRSTLRQLSAAQLLVHLLELNNQAVRPNTVKLFYSITEDGDCSSYSSHVTERFIKILLTIIEVSDDAQEVVAAMGIISRLPQESHVTQWLLDSGALQTIKACLTDQNRHSSRKIQVIENSVQALSRFSVSTNLEWQKRVAQEGIIPVLVQLLVSGTPWSKQNAAISIKQFSENSYHLSRPIKKQGIFTCCLLAHEVGCSAHLGTCTVESSFCILQANALEPLVSMLAEQEVGTCEASLDALLTLLNGEILQSGSKVLAEANAIAPMIKLLSLPAARLQEKTLVALERIFQSDEMKSKYKSMATMLLVDITQSKDSSLRSHAAKVLAQLDVLDKQSSYF 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0931 1113 CDD RING-Ubox_PUB 371 420 IPR045210 -
Glsi08g0931 1113 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 119 1113 - -
Glsi08g0931 1113 Gene3D - 445 541 IPR011989 -
Glsi08g0931 1113 Gene3D - 969 1111 IPR011989 -
Glsi08g0931 1113 Pfam Armadillo/beta-catenin-like repeat 638 676 IPR000225 GO:0005515
Glsi08g0931 1113 Coils Coil 294 328 - -
Glsi08g0931 1113 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 648 690 IPR000225 GO:0005515
Glsi08g0931 1113 ProSiteProfiles U-box domain profile. 366 440 IPR003613 GO:0004842|GO:0016567
Glsi08g0931 1113 Pfam U-box domain 371 437 IPR003613 GO:0004842|GO:0016567
Glsi08g0931 1113 SUPERFAMILY RING/U-box 357 439 - -
Glsi08g0931 1113 Pfam MCAfunc domain 134 267 IPR045766 -
Glsi08g0931 1113 SMART arm_5 637 677 IPR000225 GO:0005515
Glsi08g0931 1113 SMART arm_5 981 1021 IPR000225 GO:0005515
Glsi08g0931 1113 SMART arm_5 1025 1065 IPR000225 GO:0005515
Glsi08g0931 1113 SMART arm_5 858 904 IPR000225 GO:0005515
Glsi08g0931 1113 SMART arm_5 596 636 IPR000225 GO:0005515
Glsi08g0931 1113 SMART arm_5 907 947 IPR000225 GO:0005515
Glsi08g0931 1113 SMART arm_5 553 595 IPR000225 GO:0005515
Glsi08g0931 1113 SMART arm_5 471 511 IPR000225 GO:0005515
Glsi08g0931 1113 SMART arm_5 678 721 IPR000225 GO:0005515
Glsi08g0931 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 444 IPR013083 -
Glsi08g0931 1113 Gene3D - 542 968 IPR011989 -
Glsi08g0931 1113 SMART Ubox_2 370 433 IPR003613 GO:0004842|GO:0016567
Glsi08g0931 1113 SUPERFAMILY ARM repeat 609 1070 IPR016024 -
Glsi08g0931 1113 SUPERFAMILY ARM repeat 447 596 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0931 Glsi-ChrGlsi08 6889170 6894328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0931 369 1113 U-box Gene Family AT1G76390 27.799 3.99e-59 217