Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0928 ATGGCGGGTTCGTCAGAGACCAGGTTTCTCCAGGAGTTGTTATTATACGCAGCGAGCGCGGCTCTGAGTTGCTTGGTCTTGTTTGCTGGACTCCGACATCTTGACCCGAATCGTGAGGCATCCAAGAAAGCTCTTGAACACAAGAAAGAGATAGCCAAGCGTCTGGGTCGACCTCTCATTCAGACAAACCCTTACGAGGATGTCATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTTGACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGGTTGAGCTTGTTATACTGCCTTTAAAAAGACCTGAACTGTTTTCTCATGGCAAGCTTCTTGGCCCACAAAAAGGGGTCCTGTTGTATGGACCACCTGGCACTGGGAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCTGGAGCAGTTTTCATTAATGTAAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCCCAGAAACTTGTGGCCGCTGTGTTTAGCCTGGCTTATAAGCTCCAGCCTGCCATTATATTCATTGATGAAGTTGACAGTTTTTTGGGTCAGCGCCGAACAACAGATCATGAGGCATTGTTAAACATGAAAACAGAGTTCATGGCTTTATGGGATGGATTTACCACTGATCAGAATGCTCAAGTAATGGTCCTTGCTGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGCCTTCCTCAAGCCTTTGAAATTGGTTTTCCAGACCGAAGGGAGAGGGCTGAGATATTAAAGGTTATCTTAAAGGATGAGAGGGTTGAAGACAACATTGACTTTGATCATATAGCTGGCTTGTGTGAAGGATATACTGGTTCAGATCTGTTTGAACTCTGCAAGAAGGCTGCTTATTTTCCAATTAGGGAACTACTGGATGAAGAGAGGAAAGGGAAACATTCTCCTGCACCAAGGCCTTTGTCGCAGTCAGATTTGGAGAAGGTCCTAGCCACTTCACAGAAAACAACGAAGGCTGCTGCGGGTGAATACTGTGGACTGAGCCTACAGTCACCAAGATGGACAGAGCACAGGGAGTCAGGTGATTATCAGTTTCAAGCTGCAATCAATGAACTCTCTAAGCTTGTGGTTTCTCAAATTATTAACCTCCAATCAGATGCCCAGGATCCTTAA 1179 0.4529 MAGSSETRFLQELLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFDSIGGLETIKQALVELVILPLKRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGFPDRRERAEILKVILKDERVEDNIDFDHIAGLCEGYTGSDLFELCKKAAYFPIRELLDEERKGKHSPAPRPLSQSDLEKVLATSQKTTKAAAGEYCGLSLQSPRWTEHRESGDYQFQAAINELSKLVVSQIINLQSDAQDP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0928 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 312 IPR027417 -
Glsi08g0928 392 SMART AAA_5 118 254 IPR003593 GO:0016887
Glsi08g0928 392 CDD RecA-like_ATAD1 85 250 - -
Glsi08g0928 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 337 - -
Glsi08g0928 392 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Glsi08g0928 392 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Glsi08g0928 392 Gene3D - 80 341 IPR027417 -
Glsi08g0928 392 Pfam AAA+ lid domain 274 310 IPR041569 -
Glsi08g0928 392 Gene3D - 253 333 - -
Glsi08g0928 392 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0928 Glsi-ChrGlsi08 6864339 6869262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0928 39 318 Calmodulin-binding Proteins AT3G56690 32.042 4.48e-37 141