Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0919 ATGATGGAGGGCGATGAGTATATTCAAGCATCCAAAGAAAATAATGCTGGAAACTTCACCAGCTCAAAGCCACCTCAAACTCCGAAAAAGAAAAAGAACAAGATGGAAAACAAGAGGAGGTTCAGTGATGAACAAATTAGAGCACTTGAGTGCATATTTGAATCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAGCTAGCAAGAGAACTTGGATTGCAACCTCGTCAAGTTGCCATATGGTTCCAAAACAGAAGAGCCAGATGGAAATCAAAACGGATAGAGCAAGAATACAGGAAACTCAGAGATGAGTATGACAATTTAGCATCTCGGTTTGAGTCCCAAATGAAAGAGAAGGAGTCCTTGCAAATTGAGGTACAGAAGCTAAGAGATTTAATGGAGACATCCCACGATGATAAAAGGGAGAGCAAGGTTGCCAAGGAAAATAGCACAGACGATGGTGCTTCAGGCAGCGGACACAGCAATCGGAGGACTGAAGCAAAGCCAAGTTTCTCAAATGAGGGTTCGGGGGACAGAGAAACTAAGCATCCACATGAACAGAATGATGAGATAAAAAAGTTTGGGTGTTCTGAGGGCAGAGAATACCAATTTCAGAGAAGGGATGAGCATGTAGAGGTTCCGTTGGTATCACTTGAAAAATGGTGTGGTGTTGATCCAAGTGGTCTCTTAGATCAGTCTTGCAGCAGTTCACAATGGTTAGATTTCTGGAACTGA 735 0.4272 MMEGDEYIQASKENNAGNFTSSKPPQTPKKKKNKMENKRRFSDEQIRALECIFESESKLEPRKKMQLARELGLQPRQVAIWFQNRRARWKSKRIEQEYRKLRDEYDNLASRFESQMKEKESLQIEVQKLRDLMETSHDDKRESKVAKENSTDDGASGSGHSNRRTEAKPSFSNEGSGDRETKHPHEQNDEIKKFGCSEGREYQFQRRDEHVEVPLVSLEKWCGVDPSGLLDQSCSSSQWLDFWN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0919 244 Gene3D - 17 98 - -
Glsi08g0919 244 MobiDBLite consensus disorder prediction 128 195 - -
Glsi08g0919 244 FunFam Homeobox-leucine zipper protein ATHB-7 18 92 - -
Glsi08g0919 244 MobiDBLite consensus disorder prediction 11 26 - -
Glsi08g0919 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 173 IPR045224 GO:0003700
Glsi08g0919 244 MobiDBLite consensus disorder prediction 150 172 - -
Glsi08g0919 244 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Glsi08g0919 244 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Glsi08g0919 244 SMART HOX_1 35 96 IPR001356 GO:0003677
Glsi08g0919 244 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Glsi08g0919 244 MobiDBLite consensus disorder prediction 1 41 - -
Glsi08g0919 244 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Glsi08g0919 244 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Glsi08g0919 244 Coils Coil 84 139 - -
Glsi08g0919 244 CDD homeodomain 39 93 IPR001356 GO:0003677
Glsi08g0919 244 MobiDBLite consensus disorder prediction 173 195 - -
Glsi08g0919 244 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355|GO:0043565
Glsi08g0919 244 MobiDBLite consensus disorder prediction 128 149 - -
Glsi08g0919 244 SUPERFAMILY Homeodomain-like 22 92 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0919 Glsi-ChrGlsi08 6812335 6813143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0919 1 243 Homeobox Transcription Factor Family AT2G46680 40.909 1.47e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi08g0919 Homeodomain 1.2e-17 CL0123