Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0909 ATGTGTGTCATAAGCGTGTGCCAGAGAGAAAACAGGGGAAAGCAGAGGAAATTTGAGAGGCACTTGAAGGGAAAGCAAGAAGGTGGCGTATTTAAGGCCCTTTGGCCCCGTGCTTATGGATGTGCCATAGATATCATTTGCCGAGGGTACAAGTGGCGTGCCGCGTGCCACGTTTTCCTGGACCGACTTACAAAGAGACAAGAGGCACATGCAGGGGATGTAGTAAAGCCAGGAATTCCAACATCTATAGTTTTGCAGACTTGTCAACTACAGCTAAAAGAAAAACAAGACAAAAAGGATGATTGTCGATGTCCGTTAAAGAACATTGAAGATGCAGATACAAGAGGAAGCTTTGGGTGGAAGATGAAGGATGGATGTTACTGTGCTGCTACAGATTCAGATTTCGAGATGATGAGTCCAAACAATGCCAAACAAGTTGGTGACACAAGCCATACGAAGATCTTTGTTGGAGGATTGGCTTGGGAGACTAGAAGAGACACTCTGAAACACTATTTTGAGCAGTTCGGGGAGATCTTAGAGGCTGTTGTTATCACTGACAGAAACACTGGAAGATCAAAAGGCTATGGCTTTGTGACTTTCATGGACCCAGATGCTGCAACAAGATCTTGTCAGAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGCAATCTTGCAGCTCTTGGTGTACAAAAATTTAGCCCGTCCACAGCAGTTGCAGGAAGGGAGAAATTTAGTAACGCTTTTTGGTCTATGGTACCAATCCCATTTCAAGGAGCCCCCGGTTATTATAATCAGCACATACCCCAGTATACATTTCCTTATGCACCGTACAGCACAGCAGTTTACAGTTCTGAATTTTGGTGTTTTCTGCAGAATTACTATAATGTATATGGAGGGGAGCAGCTTCCACTTTGTTGGCCTTCACACCAGCCCTATTATGGGGTTGGACAGTTTATTCCACCAGCATATGTGAAAAAGGCACAGTACCCTGACATGTCAGTTCAGCAAGTGTTCACTGTTGGCTTACCAGAACCTGTCTCGGCTTCTCCTTCAATATCCAGCACAGGACTAGTCTCAGGAACAGTTGCTGAGCAGCAGGAATGCTAG 1113 0.4501 MCVISVCQRENRGKQRKFERHLKGKQEGGVFKALWPRAYGCAIDIICRGYKWRAACHVFLDRLTKRQEAHAGDVVKPGIPTSIVLQTCQLQLKEKQDKKDDCRCPLKNIEDADTRGSFGWKMKDGCYCAATDSDFEMMSPNNAKQVGDTSHTKIFVGGLAWETRRDTLKHYFEQFGEILEAVVITDRNTGRSKGYGFVTFMDPDAATRSCQNPYPVIDGRRANCNLAALGVQKFSPSTAVAGREKFSNAFWSMVPIPFQGAPGYYNQHIPQYTFPYAPYSTAVYSSEFWCFLQNYYNVYGGEQLPLCWPSHQPYYGVGQFIPPAYVKKAQYPDMSVQQVFTVGLPEPVSASPSISSTGLVSGTVAEQQEC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0909 370 CDD RRM_RBM24_RBM38_like 152 227 - -
Glsi08g0909 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 209 IPR000504 GO:0003723
Glsi08g0909 370 SMART rrm1_1 153 225 IPR000504 GO:0003723
Glsi08g0909 370 PANTHER BOULE-RELATED 142 346 - -
Glsi08g0909 370 SUPERFAMILY RNA-binding domain, RBD 139 227 IPR035979 GO:0003676
Glsi08g0909 370 Gene3D - 129 237 IPR012677 -
Glsi08g0909 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 229 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0909 Glsi-ChrGlsi08 6743498 6750364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0909 148 228 C2H2 Transcription Factor Family AT2G19380 41.975 4.70e-14 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0909 08 6743498 6750364 Glsi08g0909 08 6743498 6750364 ECH