Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0908 ATGGGCATTTATGGAAAATTGATTACAAAATTTGGGTCTGTGGGTCTTCATATTTCAATTGCTACGTGCATCATCAATTTGGGACGTTCTCAGGAAGGTCCAAAAAGGCAGTGCAGCGAAAACGGACGATCCGAAGAATACCCTTTTCCATTTCTCTCTCTGCTCTCTCTATATAGAATAATCATCGTCTTCTTCAGTAAATTAGTAAGACAAAGCTCAGCCAGATATCTAAAAGCCGAAAAAGATAAGCTTTTTTCTACCGGTGTCTCTTTGATTATGGCGGTTGCTGAGAATGCTGGAGTCATAATCGGCTCTTCCAGTCAAAATTTGGACAGCGGCGTAGTATCGTCGGACTCAACAGTGACAAATGAGCTCGACAAATCGAAGCCCAGAACTGGTTCCATTGGAAATGGTTTAGAAACAAATGTTCAGCCCATCAACGGCGATCAGAATCTGAACGCTGTGTTCAACCATCAGGATAGAGTTCCGACGACTGTATCAGTCCCCAACAGTAATTACAAGCCTCAAATGGCTCAGATGCGAAATGGGTTTGAGGCAAATGGGGTCCAGAACCAGCAGATGGTGGTGACCAATGGTGGATATGGGATAAAGCAGATGTCTAACGGAGTAAGAAATGGAGAAGATGGTGGTGATAGTTTCAAGCGCGATATGAGCGACTTGGAGGAACTGCTGTCGAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCGTCACTTACAAATAATCATGGGTACTTAGGTGGTGGTGGGTTTGGCTACACTAACAATTTTCTACTCCACACTAATTATGGCAATGCTAACGGGCAAACTAACAGAAGGAAGAAGAATGGCTCTACTCAGGGGAAACGAAGATCGAATAATAAAATGGATATGGAGAAGCGAGAAGAGATGATTAGGAGGACTGTTTATGTTTCGGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCTCTTTTTCTTAACTGCGGCCAGGTTGTTGATTGCCGAGTATGTGGGGATCCAAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACAGACGAAGATGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACCATGCTTGGATATTACCCAGTGAGAGTGCTACCTTCAAAAACTGCTATTGCACCAGTTAATCCCTCTTTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCACGAACTATTTATTGCACAAATATCGACAAGAAGGTTACTCAGGCAGATGTTAAACTCTTCTTCGAATCTCTTTGCGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCACAATAGCCGAAAGTGCAATTGCAGCTCTGAACTGTAGTGGTGTGATTTTGGGTTCGCTACCTATCAGAGTAAGTCCATCCAAGACACCTGTCCGGTCGCGTGCACCTCGTACTATAATGCACTGA 1479 0.4422 MGIYGKLITKFGSVGLHISIATCIINLGRSQEGPKRQCSENGRSEEYPFPFLSLLSLYRIIIVFFSKLVRQSSARYLKAEKDKLFSTGVSLIMAVAENAGVIIGSSSQNLDSGVVSSDSTVTNELDKSKPRTGSIGNGLETNVQPINGDQNLNAVFNHQDRVPTTVSVPNSNYKPQMAQMRNGFEANGVQNQQMVVTNGGYGIKQMSNGVRNGEDGGDSFKRDMSDLEELLSKLNPMAEEFVPPSLTNNHGYLGGGGFGYTNNFLLHTNYGNANGQTNRRKKNGSTQGKRRSNNKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTIAESAIAALNCSGVILGSLPIRVSPSKTPVRSRAPRTIMH 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0908 492 Pfam Ataxin-2 C-terminal region 231 245 IPR009818 -
Glsi08g0908 492 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 229 485 - -
Glsi08g0908 492 SUPERFAMILY RNA-binding domain, RBD 278 384 IPR035979 GO:0003676
Glsi08g0908 492 Gene3D - 268 384 IPR012677 -
Glsi08g0908 492 Gene3D - 390 486 IPR012677 -
Glsi08g0908 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 480 IPR000504 GO:0003723
Glsi08g0908 492 FunFam Polyadenylate-binding protein-interacting protein 10 398 476 - -
Glsi08g0908 492 MobiDBLite consensus disorder prediction 271 299 - -
Glsi08g0908 492 CDD RRM2_CID8_like 400 481 IPR034825 -
Glsi08g0908 492 CDD RRM1_CID8_like 305 384 IPR034823 -
Glsi08g0908 492 FunFam Polyadenylate-binding protein-interacting protein 11 270 384 - -
Glsi08g0908 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 382 IPR000504 GO:0003723
Glsi08g0908 492 SMART rrm1_1 308 378 IPR000504 GO:0003723
Glsi08g0908 492 SMART rrm1_1 405 476 IPR000504 GO:0003723
Glsi08g0908 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 473 IPR000504 GO:0003723
Glsi08g0908 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 371 IPR000504 GO:0003723
Glsi08g0908 492 SUPERFAMILY RNA-binding domain, RBD 393 485 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0908 Glsi-ChrGlsi08 6736175 6740871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0908 306 475 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 1.25e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0908 08 6736175 6740871 Glsi08g0908 08 6736175 6740871 ECH