Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0900 ATGGGTACTTTGCTTTTGATCTTTGGCCGAAAATTAGATCTGCTTGCTGACGTGGCTCGTGTGGGCCAGTGCCATAAGGGTTCCAGATATTTTGCTGGCTGTGGCTGTGCAAGATATTTTCCTCAGCCGTTGGATTTGAGGCGAGACTCAAAGGGGTGTGGAAAAATGGGGGAGCTAGCGTTGAGTGATGAGAAAGTACTCCAACCGAGAGCTTTGGAGAGCGAGACGCTGAAGGATAAGGCAGAAGAAGAGAGTGGAACGGAGAGTAAAGGTGGTGAATTGAATGGGTTGATGAGGTGGGAGAAATTCTTGCCCAAGTTGATATTGAGGGTACTTTTAGTGGAAGCTGATGATTCCACTCGGCAGATTATAGCTGCGCTTCTCAGAAAATGCGGCTATAGAGTGGCTGCCGTTTCTGATGGCTTGAAGGCATGGGAAATACTGAAGGGAAGACCACACAATATCGATCTAATACTGACAGAAGTGGATTTGCCTTCCATATCTGGCTATGCTCTTCTCAACTTACTTATGGAGCACGAGATTTGCAAAAACATTCCTGTTATAATGATGTCCTCACAAGATTCAGTTAGCACAGTATACAAGTGCATGCTGAAAGGAGCTGCTGACTATCTTGTTAAGCCCCTTAGAAAAAATGAGCTGAAAAATTTGTGGCAGCATGTTTGGAGAAGGCAATCATCAACAAATGGTGTAAATGGTCTCCCAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCTGAAAACAATGCTGCTAGTCGTTCAAGTGGAGATGCAGAATGCATTCTAAAAAATAAGGAATTAATTGAGAAAGGAAGTGACGCTCAGAGTTCTTGTACAAGGCCCGACTTGGTAGCGCAAAGTACCCCAGTGGATAATGTGCAGGACTTTTCTCAACTAAAATGTGATGAATCTTACCCACCCAAAAAAAAGATGCAGGAGGTTGAAACGGGCATTTGTTTAGGCCGGATATCGATCATGCCTGACAATTGTGCTGGAGGATTAAGTGTGGGTATCTGCAAAAACGGTGAGATAAGCACAACTCACGGCCAGGATGGTAATCCAGAGCATCATAGGAGTGCTGGTGTCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTTGCTCTTCTAAGGAAGCTATTGACTTGGTTGGAGCATTTCGTACTTATCCAAACTGCAGTCTCAAAAGTTCCGCCGTTGATTGCACAGGCAAGTTTGACTTTTCTCCACAATTAGATCTTTCCTTGAGAAGATCTCACCCGAGCAACTTTGAGAATGAAGTCACTGAAGAAAGGCATACCCTCATGCATTCTAATGCCTCAGCTTTCAAGCGGTATACTAACAGACAATCCCAAGCACCACGTGCAACTTTCATGAACTTGTGTGATCAACAAATAGAACAGAGAACAAATTGTGAGAAAAATATCTACAATGTGGCTACTGGCTATAACTCAGATAGTTCATCGCCAAGTATGCAAAGAAATGCTGTGTCATCTGCTACAGCCCAATCGAAGGAATCTGAACTCGCAGCCTCAAACTCCCAGCAGGGGCATTCTCTCCCAATTCCAGTAAAAGGTATTAGGTTCAACGATCTACGCAAAGCCTATGCTTCTGTACTTCCTCCAATGTTTTGTACACAGTCAGGTTCACCATCAATGCCGAGTCCAAGTTCAGTTGTGCACCTTGAACCAACCTTTCAAGTGAATTCATTTTATCAGTCCAGTGTTAAAGAAAATAGCTCAGAGCAGCTTTATGAACCTCGTGGTCAAAATGGAAACACCACCGCAAACCACATTGTGTATATGCAAGAACACAAATCGGAAAATGTGGAGGATCGAGGACATATCTCTCCGGTAACTGATCAAAGTGCAGTCAGTAGTTTCTGTAATGGAAATGCGACCCACATTAACAGCATTGGCTATGGGAGCAACTGTGGAAGTAACAGCAATGTTGATCAGGTTGCCATTGTCAGGGCAGAAGACCTCACAAACAACGCAAGTTCTCATCGATCTATCCGAAGAGAAGCAGCTCTAAACAAGTTCCGCTTAAAACGGAAAGAGAGATGCTATGAGAAGAAGGTTCGGTACGAGAGCAGAAAGAAACTTGCAGAGCAGCGTCCAAGAGTGAAAGGACAGTTTGTTCGTCAAGCGCACCCTGAAAAAGATGGCAGAGAATGTGATCTTTAG 2211 0.4414 MGTLLLIFGRKLDLLADVARVGQCHKGSRYFAGCGCARYFPQPLDLRRDSKGCGKMGELALSDEKVLQPRALESETLKDKAEEESGTESKGGELNGLMRWEKFLPKLILRVLLVEADDSTRQIIAALLRKCGYRVAAVSDGLKAWEILKGRPHNIDLILTEVDLPSISGYALLNLLMEHEICKNIPVIMMSSQDSVSTVYKCMLKGAADYLVKPLRKNELKNLWQHVWRRQSSTNGVNGLPDESVAQQKVEATAENNAASRSSGDAECILKNKELIEKGSDAQSSCTRPDLVAQSTPVDNVQDFSQLKCDESYPPKKKMQEVETGICLGRISIMPDNCAGGLSVGICKNGEISTTHGQDGNPEHHRSAGVSGEAHDNHYVQICSSKEAIDLVGAFRTYPNCSLKSSAVDCTGKFDFSPQLDLSLRRSHPSNFENEVTEERHTLMHSNASAFKRYTNRQSQAPRATFMNLCDQQIEQRTNCEKNIYNVATGYNSDSSSPSMQRNAVSSATAQSKESELAASNSQQGHSLPIPVKGIRFNDLRKAYASVLPPMFCTQSGSPSMPSPSSVVHLEPTFQVNSFYQSSVKENSSEQLYEPRGQNGNTTANHIVYMQEHKSENVEDRGHISPVTDQSAVSSFCNGNATHINSIGYGSNCGSNSNVDQVAIVRAEDLTNNASSHRSIRREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQAHPEKDGRECDL 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0900 736 Pfam CCT motif 682 724 IPR010402 GO:0005515
Glsi08g0900 736 MobiDBLite consensus disorder prediction 708 736 - -
Glsi08g0900 736 SMART REC_2 109 224 IPR001789 GO:0000160
Glsi08g0900 736 MobiDBLite consensus disorder prediction 74 93 - -
Glsi08g0900 736 SUPERFAMILY CheY-like 109 237 IPR011006 -
Glsi08g0900 736 Gene3D - 109 298 - -
Glsi08g0900 736 PANTHER TWO-COMPONENT RESPONSE REGULATOR 110 293 IPR045279 GO:0009736
Glsi08g0900 736 MobiDBLite consensus disorder prediction 491 530 - -
Glsi08g0900 736 ProSiteProfiles Response regulatory domain profile. 110 228 IPR001789 GO:0000160
Glsi08g0900 736 ProSiteProfiles CCT domain profile. 682 724 IPR010402 GO:0005515
Glsi08g0900 736 MobiDBLite consensus disorder prediction 74 89 - -
Glsi08g0900 736 Pfam Response regulator receiver domain 111 222 IPR001789 GO:0000160
Glsi08g0900 736 MobiDBLite consensus disorder prediction 491 528 - -
Glsi08g0900 736 CDD psREC_PRR 111 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0900 Glsi-ChrGlsi08 6679697 6684296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0900 387 726 Response Regulator Gene Family AT5G24470 32.378 3.34e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Glsi08g0900 Response_reg 2.6e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0900 08 6679697 6684296 Glsi08g0900 08 6679697 6684296 ECH