Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0896 ATGGAAAATTCTACCCAAGAATCCCACCTCAGATCCGAAAACTCTGTAACCTATGAGTCCCCCTACCCTCTTTACGCCATGGCCTTCTCCTCCACCCCTTCCCTCACCTCTCCCCACCAACGCATCGCAGTTGGTAGCTTCATTGAAGACTACACCAACCGTGTTGATATCCTCTCCTTCAACCCTGACTCTCTCTCCATCAGACCCCAGCCTGCCCTCTCCTTCGACCATCCCTACCCACCCACCAAGCTTATGTTCCACCCCAACGCTCACTCTTCCCTTCGAAAGTCTTCCTCCGACCTCCTCGCCACCTCCGGCGACTATCTTCGCCTCTGGGAAGTTCGGGAAAATTCCGTCGACGCAATTTCACTTCTCAACAATAGCAAGACCAGCGAGTTTTGTGCCCCATTGACCTCCTTCGATTGGAACGATACCGAACCCAAGAGAATTGGGACTTCTAGCATCGACACTACGTGTACGATTTGGGATATTGAAAAGGGGGTTGTTGAAACGCAGTTAATTGCGCATGATAAGGAAGTTTACGATATTGCTTGGGGTGAAGCTAGAGTCTTTGCGTCTGTTTCAGCGGATGGGTCTGTTAGAATCTTTGACCTGAGGGACAAGGAACACTCCACGATTATATACGAGAGTCCGCAGCCGGATACGCCTTTGCTTAGGTTGGCTTGGAATAAGCAGGACTTGAGGTACATGGCCACTATTTTGATGGATAGCAGTAAAATTGTGATATTGGATATTAGGTCACCCACCATGCCGGTGGCTGAATTGGAGAGGCATCGTGCTAGCGTCAATGCCATTGCTTGGGCTCCGCAGAGTTGTAGGCATATTTGTTCCGCGGGGGATGACTCGCAGGCGCTTATTTGGGAATTGCCCACTGTGGCTGGACCAAATGGAATTGACCCCATGTCCATGTATTCTGCCAGTAGTGAAATTAACCAACTGCAGTGGTCTGCAGCTCAGCCTGACTGGATTGCTATTGCTTTTGCAAACAAGATGCAGCTTTTGAAGGTTAGGGAGATAGGAACAGATTTACTTGACACAGGGCTTCCTATTGTTTGA 1077 0.4958 MENSTQESHLRSENSVTYESPYPLYAMAFSSTPSLTSPHQRIAVGSFIEDYTNRVDILSFNPDSLSIRPQPALSFDHPYPPTKLMFHPNAHSSLRKSSSDLLATSGDYLRLWEVRENSVDAISLLNNSKTSEFCAPLTSFDWNDTEPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSSKIVILDIRSPTMPVAELERHRASVNAIAWAPQSCRHICSAGDDSQALIWELPTVAGPNGIDPMSMYSASSEINQLQWSAAQPDWIAIAFANKMQLLKVREIGTDLLDTGLPIV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0896 358 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Glsi08g0896 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Glsi08g0896 358 Gene3D - 8 346 IPR015943 GO:0005515
Glsi08g0896 358 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Glsi08g0896 358 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515
Glsi08g0896 358 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Glsi08g0896 358 FunFam WD repeat-containing protein LWD1 11 342 - -
Glsi08g0896 358 SUPERFAMILY WD40 repeat-like 22 298 IPR036322 GO:0005515
Glsi08g0896 358 SMART WD40_4 255 295 IPR001680 GO:0005515
Glsi08g0896 358 SMART WD40_4 126 163 IPR001680 GO:0005515
Glsi08g0896 358 SMART WD40_4 68 113 IPR001680 GO:0005515
Glsi08g0896 358 SMART WD40_4 166 204 IPR001680 GO:0005515
Glsi08g0896 358 PANTHER WD REPEAT CONTAINING PROTEIN 5 343 IPR045159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0896 Glsi-ChrGlsi08 6663131 6666041 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1033 10 6887302 6888414 Glsi08g0896 08 6663131 6666041 CCT
Glsi08g0896 08 6663131 6666041 Glsi08g0896 08 6663131 6666041 ECH