Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0883 ATGGGTGTGGTCGTCGAGTGCTATCCGCCGCGTGCGGATGAAGTGGCTGTTTTGCCTCTGAATTCGCTCCCTCTGGGATTCAGGTTCCGGCCCACGGATGAGGAGCTGATTGATTACTATTTGCGACAGAAGATCAACGGAAATGGAAACGATGTTTGGGTTATTAGAGAAATTGATGTTTGCAAATGGGAGCCCTGGGATTTGCCCGATTTATCGGTTATACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGATCGCAAATATCCAAATGGGCATCGATTGAACCGGGCAACAACCCATGGGTATTGGAAGGCAACGGGCAAGGATCGCAAAATTAAGTCTGGGTCGAGCTTGATTGGGATGAAGAAGACTTTAGTGTTCTATACTGGTCGTGCGCCCAAAGGGAAGAGGACCAATTGGGTTATGCATGAGTACCGTCCTACCTTAAAGGAGCTTGATGGTACCAATCCCGGACAGAGTGCATATGTCCTCTGTCGATTATTTAAGAAACAAGACGAGACTCTTGAAGGTTCAAACTGTGATGAAGTGGAGCAGACTGTGTCAACTCCTACTACTGCCAATTACTCTCCACAAGAAATACAGTCTAATCTTGCTCGAATTGCAGTTTCTCCGTCTCTGGCTACAGAAGATGATAAGAACAGGGCAGGTCTAGTCTGTATATCTGAGAACTCTGAGGAAACCACATCCAACATTATAACACCAGTTGATTGCAATAGTGAAGGATGTGATACTAACGATGTGCGGAATCAAATTTTTGTTTCAACAGTTGCAGAGGACAATCAGCTTCTGAACTTTGACACATTTTATGATCCAACAACCGAGCCATTGTATGACAAACTATTCTCCCCAGTACATGTGCATATCCCGTCAGAATTTTGTTTTCCTGCAAGCAATGAATCAGATGGTCGTTATGGGCTGCAATATCAGTATGGTACAAATGAGGCAACTCTTTCAGATTTGTTAGATTCAGTTAATTGGGACGAGTTATCCAATGAGGAGTCCAGCAGTCAAAAGCCCTCCTCCACTTTGCTTGATGCTAAGGATAACGGATCAGGCAGTGATTCAGACGTGGAAATGGCCAACATACCGCGTCTGCAAGCATTGCACACTGTGTATCCTGAGGAGGCAATTGATAGAAGTACTCCTTTGATGTCAGAGACAAGTCCAGAATTTTACAGAACCATCTCAGACTTTAGTTGTGATGAGCAGAAGAGCAATGCGGGATTATTACAAAACAATTCTTGGAAGCCCTCACCCTTGGGCCAAGTGTACAACGTGATCAATGGCTATGATAATTCGGTTGTTAGTGATGATAATGGTACTGGTATCAGGATAAGGACTCGTCAAGTACGGAATGACCTGCCAAACTTGAATCCCGTGAGCCAAGGAACTGCACCAAGAAGAATTCGTCTACAGCGTACCCTTCAAGGGCATCTAGTTAGCTCTAATGAGGTGAAGGATGGGAGTTGTGCTCCAGAAGACCCTGATTCAGAACCGAACATTGCGAGGGAGAGGAAGGCTTCAGAAAATCACGCTGCTGATGTGGGTGCTACTGATACTAAGGTTGTGGATGAACTGCAGAAGACGTCTCCTGGGGCAACTGACTTTGTTAAGCCTTCTGAGCAACATGTTGCTAATGCGGGTTCCATGTCAGAGTTAGAAGACCTTTTATTGTGCAAAAGGGTTCCTTACACATCAAAAGCTTCCTCCAATCGCACAATGTGGTCATCTATTGTTGTATTTTTTGTCATTGCACTGGTCCTATTAGCATTCTTAGCTAACATATGGGGATATCTTAAATTTTGA 1836 0.4466 MGVVVECYPPRADEVAVLPLNSLPLGFRFRPTDEELIDYYLRQKINGNGNDVWVIREIDVCKWEPWDLPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGSSLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQSAYVLCRLFKKQDETLEGSNCDEVEQTVSTPTTANYSPQEIQSNLARIAVSPSLATEDDKNRAGLVCISENSEETTSNIITPVDCNSEGCDTNDVRNQIFVSTVAEDNQLLNFDTFYDPTTEPLYDKLFSPVHVHIPSEFCFPASNESDGRYGLQYQYGTNEATLSDLLDSVNWDELSNEESSSQKPSSTLLDAKDNGSGSDSDVEMANIPRLQALHTVYPEEAIDRSTPLMSETSPEFYRTISDFSCDEQKSNAGLLQNNSWKPSPLGQVYNVINGYDNSVVSDDNGTGIRIRTRQVRNDLPNLNPVSQGTAPRRIRLQRTLQGHLVSSNEVKDGSCAPEDPDSEPNIARERKASENHAADVGATDTKVVDELQKTSPGATDFVKPSEQHVANAGSMSELEDLLLCKRVPYTSKASSNRTMWSSIVVFFVIALVLLAFLANIWGYLKF 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0883 611 MobiDBLite consensus disorder prediction 339 359 - -
Glsi08g0883 611 MobiDBLite consensus disorder prediction 490 510 - -
Glsi08g0883 611 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Glsi08g0883 611 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 250 - -
Glsi08g0883 611 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Glsi08g0883 611 MobiDBLite consensus disorder prediction 339 367 - -
Glsi08g0883 611 SUPERFAMILY NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Glsi08g0883 611 FunFam Nac domain-containing protein 86 32 176 - -
Glsi08g0883 611 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0883 Glsi-ChrGlsi08 6573864 6577203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0883 15 498 NAC Transcription Factor Family AT4G35580 41.309 1.94e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi08g0883 NAM 2.9e-36 No_clan