Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0882 ATGATTTTATCGCTTGGTGCTGTAGCGGGTCGTGAAAGGAGGCGCGTTAACTATTCACTTCGTTCCCCCCCAACTCCAACCTTCGACGAGCTCACCACGGCGCCACCTTCTTTTTCTATAAGAAGCTTTACTGCTGGCATAACAAAACCCAGTTTTCTGTTTGCTCAAACAGAAATGCCTATTCTAACATTCGGTCATTCTAAGTTGAATGCTACCTTAACTCTTCGGTTACCTTGTAACTGCGGGGGAAGAATGAATTTGATTACAAAACTAAAATACTCTGTTGCCGAGAGAACATTGACTTCCAATTCCGTTGGTTCACCCACATCTAAACCAAACTCCACCCGCTTGAATAAGAAAACGGGAGGTTCCTCCTCGTTATATATTCGTCCAAGTTTATTAGAAATGAAAAAAGAGAGGATGGCAAACCGTGCGGAAGTTTATGAATTCTTGCGGGAGATTGGTATTGTTCCTGATGAACTTGATGGTCTGGAACTTCCAGTAACAGTTGAAGTTATGAGGGAGCGTGTAGACTTTCTTCACAATTTAGGGCTTACAATTGAAGACATCAACAATTATCCACTAGTTCTTGGCTGTAGTGTCAAAAAGAATATGATTCCCGTGCTTGATTACCTTGGGAAATTGGGAGTTAGGAAATCCACATTCACACAGTTCTTGCGGAGATACCCACAAGTCCTTCATGCTAGTGTTGTTGTTGATCTTGAGCCAGTGGTCAAGTACCTTCAGGGAATGGATATCAAGCCCAATGATATTCCTCGGGTTCTTGAGCTGTATCCAGAAGTGCTAGGATTCAAGCTTGAGGGAACCATGAGCACATCAGTTGCTTATTTGGTTGGCATTGGTGTAGGAAGAAGAGAAATTGGAGGGGTTTTAACTAGATGCCCTGAGATTTTGGGGATGAGAGTTGGTAGAGTGATCAAGCCTTTTGTGGAGTATCTGGAAAACTTGGGAATTCCAAGATTAGCCATTGCTAGACTGATAGAGAAACGACCTTATATCCTTGAATTTGGATTGGACGAGAAGGTGAAGCCAAATGTTGAATCCCTTGAAGAGTTTAACATTAGAAGAGCCTTGCTGCCCACTGTAATTGCTCAGTATCCTGACATAATTGGAATGGACTTAAAGCCAAAGCTTGACAATCAAAGGAAAATACTTAATTCTGTACTCGATATGGATCCTGAGGATTTTGGGAGAGTTGTTGAGAAGATGCCACAGGTAATTAGCCTCAGCAGTGCAGCGATGCTGAAGCATGTTAATTTTCTCAAGGCTTGTGGGTTTTCCTTACAAAAAATGAGGGAGATGGTTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGACATAATGAAACTTAACTTTGAGTTTTTCCAAAAAGAGATGGAGAGGCCTTTGGAAGACTTGGTTGCTTTTCCAGCCTTCTTCACATATGGTTTGGAGTCAACGATAAAACCTAGGCATAAGATGGTTGCCAAGAAGGGATTGAAGTGTTCTCTTGCATGGATGCTTAATTGCTCAGATGAGAAGTTTGAGCAACGAATGGACTATGACACTATTGACATGGAGGAAATGGAAATGGAACAATCATTTGACATGAATTCATTGATGGAACCAAGAAGTGATGAATCAGCTTCCGATTATGAAGACAGCGATGACGATGTTGACTAG 1686 0.4176 MILSLGAVAGRERRRVNYSLRSPPTPTFDELTTAPPSFSIRSFTAGITKPSFLFAQTEMPILTFGHSKLNATLTLRLPCNCGGRMNLITKLKYSVAERTLTSNSVGSPTSKPNSTRLNKKTGGSSSLYIRPSLLEMKKERMANRAEVYEFLREIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLRRYPQVLHASVVVDLEPVVKYLQGMDIKPNDIPRVLELYPEVLGFKLEGTMSTSVAYLVGIGVGRREIGGVLTRCPEILGMRVGRVIKPFVEYLENLGIPRLAIARLIEKRPYILEFGLDEKVKPNVESLEEFNIRRALLPTVIAQYPDIIGMDLKPKLDNQRKILNSVLDMDPEDFGRVVEKMPQVISLSSAAMLKHVNFLKACGFSLQKMREMVVGCPQLLALNIDIMKLNFEFFQKEMERPLEDLVAFPAFFTYGLESTIKPRHKMVAKKGLKCSLAWMLNCSDEKFEQRMDYDTIDMEEMEMEQSFDMNSLMEPRSDESASDYEDSDDDVD 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0882 561 MobiDBLite consensus disorder prediction 533 561 - -
Glsi08g0882 561 FunFam Transcription termination factor MTERF4, chloroplastic 311 525 - -
Glsi08g0882 561 Gene3D Transcription termination factor 3, mitochondrial 314 525 IPR038538 -
Glsi08g0882 561 Gene3D Transcription termination factor 3, mitochondrial 172 313 IPR038538 -
Glsi08g0882 561 Pfam mTERF 209 517 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 FunFam Transcription termination factor mterf4, chloroplastic 173 310 - -
Glsi08g0882 561 SMART mt_12 439 470 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 124 157 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 187 218 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 295 326 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 404 434 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 367 399 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 223 254 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 PANTHER CGI-12 PROTEIN-RELATED 208 520 IPR003690 GO:0003690|GO:0006355
Glsi08g0882 561 MobiDBLite consensus disorder prediction 102 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0882 Glsi-ChrGlsi08 6568050 6570006 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Glsi08g0882 mTERF 7.2e-108 No_clan