Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0880 ATGAAGACCATACTCTCCTCGGAGACCATGGATATCCCCGATGGGGTGAGCATCAAAGTGAATGCTAAAATCATCGAGGTGGTGGGACCTCGTGGCAAGCTTGTTCGTGATTTCAAGCACCTGAATCTCGATTTTCAGCTTATCACCGACGAGAATGGCAACAAGAAGCTTAAAGTTGAAGCCTGGTTTGGATCTCGCAAAACCTCCGCGGCTATTCGTACTGCTCTCAGCCATGTGGAGAATCTTATTACCGGGGTCACCAAGGGTTATCGCTACAAGATGCGTTTTGTCTATGCTCACTTTCCCATCAATGCAAGTATTACCAACAGCAACAAGTCCATTGAGATCCGAAACTTCCTGGGAGAAAAGAAGGTGAGGAAAGTGGATATGCTTGATGGTGTTTCGATTTTACGGTCTGAAAAGGTAAAGGATGAGTTGATATTGGATGGAAATGATATTGAGCTAGTTTCTCGGTCTGCTGCCCTCATCAATCAGAAATGCCATGTCAAAAATAAAGATATTCGGAAATTCCTTGATGGCATTTACGTTAGCGAGAAGGGAACTATATTTACTGGTGACGAGTAG 585 0.4427 MKTILSSETMDIPDGVSIKVNAKIIEVVGPRGKLVRDFKHLNLDFQLITDENGNKKLKVEAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNFLGEKKVRKVDMLDGVSILRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIFTGDE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0880 194 FunFam 60S ribosomal protein L9 90 193 - -
Glsi08g0880 194 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Glsi08g0880 194 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Glsi08g0880 194 FunFam 60S ribosomal protein L9 1 89 - -
Glsi08g0880 194 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Glsi08g0880 194 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Glsi08g0880 194 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Glsi08g0880 194 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Glsi08g0880 194 Gene3D - 90 194 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Glsi08g0880 194 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Glsi08g0880 194 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0880 Glsi-ChrGlsi08 6549830 6551428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0880 1 189 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 83.684 3.59e-116 326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0880 08 6549830 6551428 Glsi08g0880 08 6549830 6551428 ECH