Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0863 ATGGAGACTCTGAAAGCGGCAATCCCAGAGAGGCTGAAGCGAATGATTGGAGAGAGCACTACCGACGATCTTCCCAACACATGTTCTTCTCTTCACCACTTCTTTCTTCATTTCGAGCCTTTTCACCAGATGGTGAGTGACTTAGCGGACCCAGAAAATGCTCTCTGTAGTAAGAGTGAAGCCCTTGCTTTGGAATCAAAGCAGCTTGGCAATCAATGCTTCTTGAACGGAGATTATACGAAGGCTTTGAGTTGCTATACTCAGGCATTGCGTGTGGCTCCTTTGGAGGCTGGTGAGTTGGAGAAGAATCTGGTTGCAACTTTATATATCAATCGGGCTACTGTATTGCATAAAATGAATCTTTCAATAGAATGTTTGCGAGACTGCACTCGAGCTCTTCAGATACGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGTAAATGCTTCATTGGGAAACTATAAAGATGCAATCTGTGATTTAAATGTGGCTAAGAGCATGGAATCATCATTGGGTGGGAAGAAACAAATAGAAAGTGAGCTAAAAAATATTTTACACCACTGTGAGAGTACAAGTTCATCTGTAAAGCATAAGAAGAATAGCTTGGATACAGTGGGTGAGGTGCCCCAAATAAGGCTACAGTGTATCACCAAGCCTGATAGAGGACGAGGGATGGCTTCTTCATGTGACATTTCATCGGCTTCTTTAGTTCATGTTGAAGAACCTTATGCTATGATGATATTAAAGCAATGCCGGGAAACTCATTGCCATTATTGCTTGAATGACCTGCCTGCTGATAGAGTTCCTTGTAGATCATGTGCAATACCACTGTATTGCTCCCAGCAGTGTCAGATACAGGCAGGTGGACAGATATTCAAAACTTACCCAGAAGACCATGGCATTCTTAAAAATCTACCTAATGATCTTGGAGAGTATGTAGCAGAAATTATATTAGGCAATGATTCTGAACAGGAAATTAAGGATGTTCCTGAACATAAACATGAATGTCAAGGTGTAAATTGGTCTGCAGTATTGCCATCTGAGATAGTTTTGGCTGGCCGAGTACTAGTGAAGTTCATGCAGAACAGTGCACATGAAGATATTATAAACTTTGTGAAAAAGCTGGAACTTTCTCATTGTTATACACAAATGCCATCTGATAGGAAATTGGATCTACATATATATGCCATTGTATTGCTATATTGTCTACAACACTCGTATGGTGCTGTGAGTTCCATGGATGGAGTCTCTATGTCACAGGTTGTCATAATTTTTTCTCAAATTAAAGTGAATTGCATGACTGTTGTTCGCATGAGATCAATAGATGCTCATGGACCACGAGATCAGTTTGAAGAATCTCCATCCAGCACAATTTCAACAAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTACAAATCTGGCAGTTTGTTCAACCATTCTTGCCAGCCAAATATTCATGCATATTTCCTTTCACGTACTCTTTGTATACGAACGACAAAAGTTGTAGCAGCTGGCTGTCAGCTGGAACTGTCTTATGGTCCACAGGTTGGGCTGTGGGATTGTATAGCTCGCCAAACCTTTCTCAAAGATGAGTATGCATTCCGATGTCAGTGTAGTGGTTGTTCAGAATTCAATTTGTCAGACATTGTCCTCAGTGCTTTTCACTGTGTCAATCTAAATTGTTCTGGCGCAGTCTTGGACGGCAGAGTAGTTGACTTTGAAAAGCATGAAATCAAGCACTTCCCCTGTGCTGACAAAGTTGACAAAAATGATGACATTTATCAAGTGTGTCCTCAGTTATTCGACCAAAATAGTGGCTCCATTCATATTCAACCTGCATACTGTTTAAAGTGTGGTTCTTACCGTGATTTAGAATTTTCACGTGCTGCAGTTGATCAAGCTTGGGTATGCATCAAAAGATTGCAGGATGTAATAATATCGAAAGAAATTTCAAATACTGCTATTTCAGAGGCTTTGAGATCTCTTCATTTGCTGAGATCAAATTTGCATGCATACAACAAGCATATTGCAGAGGCAGAGGACAGCCTTGCCCAGGCCTTTTGTTTATTGGGAGAATTACAATTAGCAATGGACCATTGTAAAGCATCTATGCAGATTCTGGAAAAGCTATATGATCCTGATGATATTGTCATTGCTAATGAACTTGTGAAACTTTGTTCACTTCAAATTTCCATGGGTGATGGAACTGCTCTGGACAGCCTAAGGCGAATTTGTGATATTTTCTCGCGTTATTATGGACCTCATGCACACTTGGTATTCCCATATCTTCAGTACCTAAGGAAAGAAGCTGAGAATATTTCAGTGAAGGCCCTATGA 2349 0.4066 METLKAAIPERLKRMIGESTTDDLPNTCSSLHHFFLHFEPFHQMVSDLADPENALCSKSEALALESKQLGNQCFLNGDYTKALSCYTQALRVAPLEAGELEKNLVATLYINRATVLHKMNLSIECLRDCTRALQIRPSYAKAWYRRGKVNASLGNYKDAICDLNVAKSMESSLGGKKQIESELKNILHHCESTSSSVKHKKNSLDTVGEVPQIRLQCITKPDRGRGMASSCDISSASLVHVEEPYAMMILKQCRETHCHYCLNDLPADRVPCRSCAIPLYCSQQCQIQAGGQIFKTYPEDHGILKNLPNDLGEYVAEIILGNDSEQEIKDVPEHKHECQGVNWSAVLPSEIVLAGRVLVKFMQNSAHEDIINFVKKLELSHCYTQMPSDRKLDLHIYAIVLLYCLQHSYGAVSSMDGVSMSQVVIIFSQIKVNCMTVVRMRSIDAHGPRDQFEESPSSTISTSNVEQVRVGKAIYKSGSLFNHSCQPNIHAYFLSRTLCIRTTKVVAAGCQLELSYGPQVGLWDCIARQTFLKDEYAFRCQCSGCSEFNLSDIVLSAFHCVNLNCSGAVLDGRVVDFEKHEIKHFPCADKVDKNDDIYQVCPQLFDQNSGSIHIQPAYCLKCGSYRDLEFSRAAVDQAWVCIKRLQDVIISKEISNTAISEALRSLHLLRSNLHAYNKHIAEAEDSLAQAFCLLGELQLAMDHCKASMQILEKLYDPDDIVIANELVKLCSLQISMGDGTALDSLRRICDIFSRYYGPHAHLVFPYLQYLRKEAENISVKAL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0863 782 Gene3D SET domain 419 516 IPR046341 -
Glsi08g0863 782 ProSiteProfiles SET domain profile. 421 517 IPR001214 GO:0005515
Glsi08g0863 782 Pfam SET domain 451 517 IPR001214 GO:0005515
Glsi08g0863 782 Gene3D SET domain 226 256 IPR046341 -
Glsi08g0863 782 SMART tpr_5 63 96 IPR019734 GO:0005515
Glsi08g0863 782 SMART tpr_5 140 173 IPR019734 GO:0005515
Glsi08g0863 782 SMART tpr_5 106 139 IPR019734 GO:0005515
Glsi08g0863 782 SMART tpr_5 681 714 IPR019734 GO:0005515
Glsi08g0863 782 Gene3D Tetratricopeptide repeat domain 526 780 IPR011990 GO:0005515
Glsi08g0863 782 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Glsi08g0863 782 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 777 - -
Glsi08g0863 782 Gene3D Tetratricopeptide repeat domain 38 203 IPR011990 GO:0005515
Glsi08g0863 782 Gene3D - 257 289 - -
Glsi08g0863 782 SUPERFAMILY SET domain 219 543 IPR046341 -
Glsi08g0863 782 SUPERFAMILY TPR-like 64 713 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0863 Glsi-ChrGlsi08 6445708 6462158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0863 77 160 Glycosyltransferase AT3G04240 29.670 9.18e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi08g0863 SET 3.6e-06 No_clan