Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0853 ATGGAAACATCGGGTGCTAATTCAGAACAACACGCCATCTCTTCTTCTTCATCATCTACCGGAGGGGTAAATAACACTGCAAGTACGGTAACGTGGAATGGGATGAGGTTACCCCCTGTCAGCGCCTTCCGTTCTCCAATTTCATATCTATTGAATCACTCGGGCATTCTCCACTCAAGTTCGTCAACCCATGAATCAGAGGCTGTGACAGTCAACAACGGAGTTACCACTTCTGAATTAAGACCTCGCCTTCAAATTCAATCGCTTGATTCTGCTGCTGGTACCGCGTGCAGTGGCAGCAGCAGCAGCAGCAGCAGTACTGGGGAAGTTTCAATACGGATCATTGGAGCTGGAGAACAAGAGCACAGTGTTGGATTAGGTTCTTTTTCTTCGTCATCCCAGAATCAGCTTGGAGAAGTCGTTCATGATGATCATGATCATCTGATGGGAAATAGAGGCGGAATGCTTGCATCGGATGACGATGCTGAGGGTCGCAGTGGAATTACGGTTGATGGGAGAGTCCCTTTAGTGTCTTCATCTACATCGGTCGCTAGTGGACAGGTAGACGGAGATGCTGGGAATGGCTTGGAAAGTAACAGCAGGGATTCATCTTCTTACCAGAGATATGATATTCAGCAGGTTGCTAAGTGGATTGAGCAGATTCTTCCTTTCTCGCTGTTGTTGTTGGTTGTTTTGATTCGTCAGCATTTGCAAGGTTTCTTTGTGACAATTTGGATTTCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAAGCAGACAGCATTAAAGGGTGATAGGAAAGTCTCTGTTCTTGTTGGTATCTCTTTTGCCTTCATGTTTCACGTGATGTGCATTTACTGGTGGTATCGAAATGATGATGTTTTATACCCACTGGTCATGCTTCCTCCGAAAGCACCGCCTCCTTTCTGGCATGCTATATTCACCATCTTGGTTAATGATACGCTGGTGCGGCAGGCAGCAATGGTTTTCAAGTGCTTGCTGCTTATATATTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTTGAGTACACGCTGCTGTTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGTTTTTTCTTGAACAAGGATAATGGAAGTCTCTTTTCATCACTAACCACAGGGTTGTATTTAACTTTTAAGCTAACATCTGTTGTCGAGAAGGTTCAATGCTTCTTTTCTGCCTTAAGAGCATTATCAAGAAAGGAAGTTCATTATGGGGTTTGTGCTACAGTAGAACAGGTAAATGCTGCTGGCGACCTATGTGCTATATGCCAGGAGAAGATGCATGCTCCAATCTTGTTGCGCTGTAAACACATTTTCTGCGAGGAGTGTGTATCAGAATGGTTTGAGAGAGAAAGGACTTGCCCGCTTTGCAGAGCATTGGTAAAACCTGCTGACCTGCGGACCTTCGGGGATGGATCGACAAGTCTATTTTTCCAGCTGTTTTAA 1503 0.4478 METSGANSEQHAISSSSSSTGGVNNTASTVTWNGMRLPPVSAFRSPISYLLNHSGILHSSSSTHESEAVTVNNGVTTSELRPRLQIQSLDSAAGTACSGSSSSSSSTGEVSIRIIGAGEQEHSVGLGSFSSSSQNQLGEVVHDDHDHLMGNRGGMLASDDDAEGRSGITVDGRVPLVSSSTSVASGQVDGDAGNGLESNSRDSSSYQRYDIQQVAKWIEQILPFSLLLLVVLIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFMFHVMCIYWWYRNDDVLYPLVMLPPKAPPPFWHAIFTILVNDTLVRQAAMVFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDNGSLFSSLTTGLYLTFKLTSVVEKVQCFFSALRALSRKEVHYGVCATVEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0853 500 SMART ring_2 439 476 IPR001841 -
Glsi08g0853 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 487 IPR013083 -
Glsi08g0853 500 SUPERFAMILY RING/U-box 430 482 - -
Glsi08g0853 500 CDD RING-HC_RNFT1-like 437 477 - -
Glsi08g0853 500 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 15 500 IPR044235 GO:0061630|GO:1904294
Glsi08g0853 500 MobiDBLite consensus disorder prediction 181 202 - -
Glsi08g0853 500 ProSitePatterns Zinc finger RING-type signature. 454 463 IPR017907 -
Glsi08g0853 500 ProSiteProfiles Zinc finger RING-type profile. 439 477 IPR001841 -
Glsi08g0853 500 MobiDBLite consensus disorder prediction 1 24 - -
Glsi08g0853 500 Pfam Zinc finger, C3HC4 type (RING finger) 437 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0853 Glsi-ChrGlsi08 6386392 6393144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0853 44 500 C3H Transcription Factor Family AT5G01960 62.664 0.0 566