Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0850 ATGTCAAAATTCTTGAATCCGACGCGTCCAGGGAGATACGTCGCCATGGGAAGGAGACCTGCAAGGTGCTATCGCCAAATAAAAAACAAACCCTACCCTAAGTCACGATTTTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTCGTTAGCTGGGAGAAGGAAAATGTTTCAAGTGAAGCTTTGGAAGCTGCTAGGATTGCTTGCAACAAATATATGGCCAAATTTGCTGGAAAGGATGCATTCCATTTGAGAGTAAGGGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACGGGAATGAGAGGTGCATTTGGAAAGCCACAAGGTACATGTGCTAGAGTGGCAATTGGTCAAGTCCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGCCATCATGCACAGGAGGCCCTCCGTCGTGCTAAGTTTAAGTTTCCTGGTCGCCAAAAGATCATTGTTAGCAGGAAATGGGGTTTCACCAAGTTTAACCGTACTGATTATCTGAGGTTCAAGTCAGAGAACAGGATTATGCCAGATGGTGTGAATGCAAAGCTTCTTGGATGCCATGGACCGTTGGCTAACCGTCAACCTGGAAGAGCTTTCCTGTCCAGTGCAACTGCTTAG 711 0.4557 MSKFLNPTRPGRYVAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLRFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSATA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0850 236 NCBIfam 50S ribosomal protein L16 16 189 IPR001197 GO:0003735|GO:0005840|GO:0006412
Glsi08g0850 236 ProSitePatterns Ribosomal protein L10e signature. 123 144 IPR018255 GO:0003735|GO:0005840|GO:0006412
Glsi08g0850 236 Pfam Ribosomal protein L16p/L10e 27 181 IPR016180 GO:0003735|GO:0005840|GO:0006412
Glsi08g0850 236 CDD Ribosomal_L16_L10e 56 181 IPR016180 GO:0003735|GO:0005840|GO:0006412
Glsi08g0850 236 SUPERFAMILY Ribosomal protein L16p/L10e 19 188 IPR036920 GO:0003735|GO:0005840|GO:0006412
Glsi08g0850 236 FunFam 60S ribosomal protein L10 16 221 - -
Glsi08g0850 236 Gene3D Ribosomal protein L10e/L16 16 232 IPR036920 GO:0003735|GO:0005840|GO:0006412
Glsi08g0850 236 PANTHER 60S RIBOSOMAL PROTEIN L10 16 228 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0850 Glsi-ChrGlsi08 6376502 6381146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0850 16 235 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.364 1.10e-144 401
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1455 10 9782507 9788470 Glsi08g0850 08 6376502 6381146 CCT