Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0848 ATGAAGTTCCAGTCCTCTAGTTTTTCACTCTTTATTCTAAGCTTCATACTGTCTCTCTTTTGCTTGATTATAGCTGACCTCAACTCTGACAGACAAGCGCTCTATGAATTTGCTTTGAATGTCCCACATGCCCCAAGACTCAACTGGAATGATTCTGCTCCAATTTGCATATCATGGGTTGGCATCACTTGCAACTCAAACCGAACTCGTGTAATTGGCATCCATCTTCCAGGGTTTGGACTCACAGGCTTCATTCCAGAGAAAAGCATAGGAAAACTAGATGCTCTTAGAGTACTGAGCCTTCATTCCAATGGCCTCTCTGGAAATCTTCCTTCTGACATCCTCTCTATTCCTTCACTCCAATATGTACACCTTGAGCATAATAACTTCTCAGGTCCAATTCCTTCCCCTGTCTCCCCTAAACTCATTGCATTGGATATTTCCTTTAACTCCTTCTCTGGGTGTATCCCACCTGCATTCCTGAATCTGAGACGGCTCAGCTGGTTGTATCTCCAGAACAACTCCATTTCTGGAGCTATCCCTGACTTCAACCTCCCAAGACTCAAGTACTTGAATTTGAGCTACAACAACTTGAATGGCTCAATTCCAAATACCGTAAAAAATTTCCCTTACACTTCTTTTATTGGGAACTCTCTCTTATGTGGGCCACCTCTCAATCATTGCTCTACAGTCTCCCCTTCTCCATCTCCTTCTGTGTACCAGCCACTCTCTCCAGCAACTACCCAAGAACAAAAACCTACCACCCCCAATAAAAGCTTTGGTCTAGCTACTATACTTGCTCTAGCAATTGGGGGCTGTGCGTTCCTCTGTCTCCTAGTTGTAGTGATCTACACATGCTGTTTGAAGAGGAAAAGCGGTGAAAGCAGTGGCATACCGAAAGGAAAGGCGTCTTGCGTTGGAAAGACTGAGGTTTCAAAGAGTTTCGGGAGTGGGGTACAAGAAGCTGAGAAGAACAAGTTGTTCTTCTTTGAAGGTTGCTCTTACAGCTTTGACCTTGAGGATCTGTTAAAGGCATCAGCTGAGGTTCTTGGAAAGGGGAGTTATGGAACGGCTTACAAGGCTGTTCTGGAGGAGGGAGTAGCTGTGGTTGTCAAAAGGTTGAAGGAAGTTGTGGTTGGAAAAAAGGAGTTTGAGCAGCAGATGGAAGTTGTAGGGAGATTTGGAAGGCACACTAATGTCATGCCCCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTCTGGTTTACAACTACATGCCAGGCGGTAGCTTGTTCTCCTTGTTGCATGGAAACAGGGGTGCAGGAAGAACCCCATTAGACTGGGATTCAAGAATGAAGATAGCACTTGGAACTGTGAAGGGGCTTGCTTTCATCCACTCTGAGGGTGGTGCAAAATTTACACATGGCAACATCAAGTCTTCCAATGTCCTCGTTACTCAAGACCTTGATGGTTGCATCTCTGATGCTGGATTGACGCCTGTGATGAATACCCCGGCAACCATGTCTCGAGCCAATGGCTACCGCGCTCCAGAGGTGACCGATTCACGGAAGATCACCCAGAAGTCAGATGTATACAGCTATGGTGTGCTGCTTCTAGAAATGCTGACAGGAAAAAGCCCAGTGAGATATCCTGGGTACGATGATGTCGTTGATCTACCAAGGTGGGCGAGGTCTGTTGTTCGGGAGGAATGGACAGCCGAAGTATTTGACGAGGAGCTATTGAGAGGGCGATATGTTGAAGAGGAAATGGTACAGATGCTTCAGATTGCGCTGGCCTGTGTGGCGAAGGTGCCAGATATGAGGCCCAGAATGACTGATGCTGCTAGAATGATAGAAGAAATTAGGCAGCCTGAGTTGAAGAACAGGCCATCCTCAGAATCCGAGTCTAGCGTGCAAACACCGTGA 1908 0.4623 MKFQSSSFSLFILSFILSLFCLIIADLNSDRQALYEFALNVPHAPRLNWNDSAPICISWVGITCNSNRTRVIGIHLPGFGLTGFIPEKSIGKLDALRVLSLHSNGLSGNLPSDILSIPSLQYVHLEHNNFSGPIPSPVSPKLIALDISFNSFSGCIPPAFLNLRRLSWLYLQNNSISGAIPDFNLPRLKYLNLSYNNLNGSIPNTVKNFPYTSFIGNSLLCGPPLNHCSTVSPSPSPSVYQPLSPATTQEQKPTTPNKSFGLATILALAIGGCAFLCLLVVVIYTCCLKRKSGESSGIPKGKASCVGKTEVSKSFGSGVQEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGVAVVVKRLKEVVVGKKEFEQQMEVVGRFGRHTNVMPLRAYYYSKDEKLLVYNYMPGGSLFSLLHGNRGAGRTPLDWDSRMKIALGTVKGLAFIHSEGGAKFTHGNIKSSNVLVTQDLDGCISDAGLTPVMNTPATMSRANGYRAPEVTDSRKITQKSDVYSYGVLLLEMLTGKSPVRYPGYDDVVDLPRWARSVVREEWTAEVFDEELLRGRYVEEEMVQMLQIALACVAKVPDMRPRMTDAARMIEEIRQPELKNRPSSESESSVQTP 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0848 635 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 626 - -
Glsi08g0848 635 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Glsi08g0848 635 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Glsi08g0848 635 Gene3D Phosphorylase Kinase; domain 1 309 419 - -
Glsi08g0848 635 FunFam pollen receptor-like kinase 1 312 419 - -
Glsi08g0848 635 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
Glsi08g0848 635 SUPERFAMILY L domain-like 39 226 - -
Glsi08g0848 635 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515
Glsi08g0848 635 PANTHER OS05G0588300 PROTEIN 13 627 - -
Glsi08g0848 635 FunFam Nuclear pore complex protein NUP107 27 182 - -
Glsi08g0848 635 SUPERFAMILY Protein kinase-like (PK-like) 348 613 IPR011009 -
Glsi08g0848 635 Gene3D Ribonuclease Inhibitor 140 230 IPR032675 -
Glsi08g0848 635 Pfam Protein kinase domain 348 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0848 635 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0848 635 MobiDBLite consensus disorder prediction 614 635 - -
Glsi08g0848 635 ProSitePatterns Protein kinases ATP-binding region signature. 350 381 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0848 Glsi-ChrGlsi08 6365177 6367873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0848 15 630 Receptor kinase-like Gene Family AT5G58300 60.256 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi08g0848 Pkinase 7.1e-34 CL0016