Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0846 ATGGTTTCCTCTCAATTATCTACCTTAAATGGGAATTATTTGAAGAAACCTTTCCTGAAGCAATTGCTTCTCCCAACTGGATCACCTGATGTTTTGCCTTCTGATTATGTCGAGTTCGAATTTTCTGATGTGTTTGGTCCAGCTCCTGTTCACGCCTCAAAAGAACTCTGTTCTGAGAAATCTAGGAACTTGGTGGCTACACCAGATCCAAACAATAAGATTCACAATGACCCAACTGTCATTCACAGTCGCTCCCATTCTTTCTTGGGCCCCACAGCCTATATTAGTCAGTCCCTGAAGCTTATCAAAATCAACTTACATGAGACGGAGGATGCACTGGATCTGGCGGATGAGGCCTGTAGGGAAACACAGAAAAAATTCAAGGAACACTCTGTTAAGAATGCTGCTGTAGATAAATCTAATGAACAATTCAATGATTTCTGTTTGAAGTGTATTGGACTCGAGGATTTTGAAGTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGTAAGGTGTACCAGGTGAGGAGGAGAGGTACATCAGATATATATGCAATGAAGGTCATGCGCAAGGACAAGATCATGCAGAGAAATCACGCTGAATATGTCATATCTGAAAGGGATATATTGACAAAGGTGGACCACCCTTTTATTGTGCGGCTCAGATACTCATTCCAAACCAAATATAGGTTGTACCTTGTGCTTGATTTCGTCAATGGTGGTCACCTTTTCTTTCGGCTTTACCGCCAAGGCCTATTCAGGGAGGATTTGGCACGCTTCTATGCTGCTGAGATTGTTTCTGCTGTTTCTCATCTTCATGCAAACGGTATAATGCACAGGGATCTTAAGCCCGAAAATATTCTTGTGGATGCCCTTGGTCATGTAGTGTTGACAGATTTTGGCCTGGCTAAGCAATTTGATGAGAATGCAAGGTCAAATTCTATGTGTGGAACTTTGGAATACATGGCCCCTGAAATCGTAGTGGGGAAAGGCCATGATAAGGCAGCCGATTGGTGGAGTGTGGGAATTCTACTATTCGAAATGCTTACAGGGAAGCCTCCCTTCACCAGTGGGAATAGACAAAAGATTCAGAACAAGATAATAAAGGACAAGATCAAGCTTCCAGCGTTTTTGTCAAGTGAGGCACATTCACTGTTAAAAGGGCTGTTGCAGAAAGAAACCAGCAAACGCCTTGGCAGTGGTCCAAGTGGAAGCGAGAAGATCAAAAGCCACAAGTGGTTCAACTCAATTAACTGGAAGAAATTAGAAGCTCGTGAAATTAGGCCGAACTTTGTCCCAGAGGTTGCTGGGAAGCACTGTGTTGCTAACTTTGAGGACCGGTGGACTAAGATGCCTGTCCTGGATTCTCCAGCTGTTAGTCCCAAATTCGATGACAACCCCTTCAAGGGGTTCACCTATATTGGTAGAAAAATGTCCGATAGTTAG 1443 0.4345 MVSSQLSTLNGNYLKKPFLKQLLLPTGSPDVLPSDYVEFEFSDVFGPAPVHASKELCSEKSRNLVATPDPNNKIHNDPTVIHSRSHSFLGPTAYISQSLKLIKINLHETEDALDLADEACRETQKKFKEHSVKNAAVDKSNEQFNDFCLKCIGLEDFEVLKVVGQGAFGKVYQVRRRGTSDIYAMKVMRKDKIMQRNHAEYVISERDILTKVDHPFIVRLRYSFQTKYRLYLVLDFVNGGHLFFRLYRQGLFREDLARFYAAEIVSAVSHLHANGIMHRDLKPENILVDALGHVVLTDFGLAKQFDENARSNSMCGTLEYMAPEIVVGKGHDKAADWWSVGILLFEMLTGKPPFTSGNRQKIQNKIIKDKIKLPAFLSSEAHSLLKGLLQKETSKRLGSGPSGSEKIKSHKWFNSINWKKLEAREIRPNFVPEVAGKHCVANFEDRWTKMPVLDSPAVSPKFDDNPFKGFTYIGRKMSDS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0846 480 ProSitePatterns Protein kinases ATP-binding region signature. 163 186 IPR017441 GO:0005524
Glsi08g0846 480 Pfam Protein kinase domain 157 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0846 480 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 480 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi08g0846 480 Coils Coil 106 126 - -
Glsi08g0846 480 CDD STKc_AGC 163 413 IPR045270 GO:0004674|GO:0005524
Glsi08g0846 480 SMART serkin_6 157 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0846 480 SUPERFAMILY Protein kinase-like (PK-like) 144 458 IPR011009 -
Glsi08g0846 480 SMART pkinase_C_6 414 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi08g0846 480 Gene3D Phosphorylase Kinase; domain 1 154 454 - -
Glsi08g0846 480 ProSiteProfiles Protein kinase domain profile. 157 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0846 480 FunFam Non-specific serine/threonine protein kinase 237 432 - -
Glsi08g0846 480 Pfam Protein kinase C terminal domain 435 472 IPR017892 GO:0004674|GO:0005524|GO:0006468
Glsi08g0846 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Glsi08g0846 480 Gene3D Transferase(Phosphotransferase) domain 1 237 432 - -
Glsi08g0846 480 FunFam Non-specific serine/threonine protein kinase 154 256 - -
Glsi08g0846 480 PANTHER RIBOSOMAL PROTEIN S6 KINASE 108 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0846 Glsi-ChrGlsi08 6351155 6353237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0846 1 473 AGC Kinase Gene Family AT3G08720 64.421 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Glsi08g0846 Pkinase 4.2e-76 CL0016