Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0840 ATGGGCAGACGAAAAAGTAGACCGCATCGATCAGGCGGGATAACACTAGAAACACATGCAACTGCTGGAGCAGGATTGGATAAACAGATAATCGTGGAATCAGGGGAAGAAGCAAGGGAAGATTTTGGTGAAATTGATAAACCCTACTTTGTGGAAGTTGATAGGTCCAGTTGGTTATCAAATGAACACCTTGATATTTCTGAAGTTGTTTTAACTGATTTGAATGTGAGAGAAGGTTTTTCTGGTTTTGAACTTTCTGAGGATATTTATCAGAATGTCCAATATTCTTTAAGATTTCGGCTATGTAATGTCAATCATATTCTTGGCCGAATTAAGTTAGGTCATTGGCCTGTATTGGCTTATAGTGATATTCATCTAGAGTTTGTAAGAAGGGTAACAATGGATCATATGGAAACATGTACAGTGTTGCTATCTGGGATTTTTGACGGACCTGATGAAGGTATTTCTGGTCTTATTCACTTGGCAAGTATGAAATTTTTTACACTGAGGCCAGTTCTTGGGATTAGACTTTCTGAGGATATGTTCACCATTAAGTTAAGGGTTGAGGTACTAAAGAGTGCCTTTGATTCATGTGAGTCACTTTTAGATGGTTCCAGACAACTATGGAAAAAGAGTATGATTAATGTCATGTCTTGGCTACGTCCTGAAATAATAACACCAGAAATTTTGTATGGGGTTGGTAGCTATGGTAGCTATATGAAAATGGAAGATGATCTGCAGATAGAGACGGGAGATGACACTTGCTACACCAGGAAACATGTGAGATTCAATCCTGCGGCTTTCTATGAAGCCATTAGGCCTTCAAAATCAGAACCCATGCTTGAAGATGACATACCAGACCTACTTCCTGAATTGAGACCATATCAACGGCGTGCAGCTTTCTGGATGGTAGAACGAGAGAAAAAAATAGCAGGAGGCCAGGGGGAAAGAGAGAGAAGCCATTTTCATTCTCCTTTATGTGTGCCTGTGGATTTAATTGACACAAATTCTAAAATGTTCATTAATCCATTCAGTGGAAATATTTCATTGTACCCAGATACCGCTGCGCCTTATGTCTTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAACTGCTTGCTTGCATCTTTGCTCACCGGAGATCAGTGTCTGAAAGTGACATTTTTATTGATTCCATGTTGCAAGTTAATGGAGATCAAAAGGTCAATTTTCAAAGAGTCAAAAGAGACCGTGTGGAATGTGCATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGTCTATGGGTTCAATGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCTCCTAAAGGAAAACCACTGAAATCAAAACAAGGATCGGAAAGCAAGAAATTTAAGACCACCATAGCTGTGAGGGATGGAGAATATGTATGCCAAATGTGCTCTGAACTGATACAAGCTACTGAATCTCCTATTGCTTCTGGTGCCACTCTTATTGTTTGTCCAGCTCCTATATTGCCCCAGTGGCATGATGAAATTAACCGTCATACACGTCCAGGCTCCTTGAAAACATATGTTTATGAAGGCGTGCGAGACACATCTTTCAATAATACATCTCTGGTGGATATCAGTGAACTTGCCTCTGCTGACATTGTATTAACTACATACGATGTGCTTAAAGAGGATTTGTCCCATGATTCCGATAGGCATGTAGGTGATCGGCACTTTTTGAGATTTCAGAAAAGGTACCCTGTTGTCCCAACTCTTCTTACCAGAATATACTGGTGGAGAGTTTGTCTCGATGAGGCTCAAATGGTAGAGAGTAATGCTGCTGCCGCCAGTGAAATGGCTTTGCGGCTCTATGCAAAGTATCGTTGGTGCATAACAGGAACCCCCATTCAACGTAAGCTTGATGACTTATATGGACTTCTACGATTCCTTAAAGCAAGTCCTTTCAATATTTACAGGTGGTGGACTGATGTTATTCGGGATCCTTATGAGAAGGGAGATATTGGAGCTGTGGAATTTACACATAAATTTTTTAAACAAATCATGTGGCGCTCGTCAAAAGAACATGTTGCAGATGAGTTGCAGCTTCCTTCCCAGGAGGAGTGCCTCTCTTGGCTCACTCTCTCATCAGTAGAAGAGTACTTTTACCAGAGGCAACATGAAACTTGTGTTAACTATGCTCATGAAATTATTGAAAGTTTGAGAAACGATATTCTTAATAGAAGAGTCCCAGGTGCTGTTTCTTCAGATGATTTTTCTGATTCTTACATCACTCACACAGAAGCAGGGAAGCTATTGAATGCTCTGCTGAAGCTTCGCCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTGCGTTCTCTGCAGCAGTCACCCATGACCATGGAGGAAATACTAATGGTTCTTATAAGTAAGACTAAGATAGAAGGCGAGGAAGCCCTCAGGAGGTCAGTTGTTGCTTTAAATGGGCTTGCAGCAATAGCTGTAATGCAGAAGGATTTTTCTCAAGCAGCATTGCTGTACAATGAAGCACTGACTTTGGCTGAAGAAAATTCCGAAGATTTCCGCTTGGATCCTTTGTTAAATATTCACATTCATCATAATCTTGCTGAAATACTCCCCCAGACTACAAAATTTTCCTTAAAATTCCCAACCAAAGGAAAGCAGTTCTCTGGAACTTCTGGACTTAAGACAACAAGAAAACATGCCCTTGAAAAGGTTGATAATTGTTTTGTTAAGAGGAAGAAAGGGAATGGCTCTGATTATCTAGATTTCACAATAGCTTCTGAAGAACCATTGAATGTTACATCTAGCTTATCAGACAATTACTTAAATAGGTATCGGGAATTTGATGACGTATCTATCAGCCCTTTAAAATATTTGATAGCAGAATGTGAAGATTTGAAACAGAAATACCTATCTATGTTCAGTTCGAAGCTATCTGCAATTCAACAGGAATTTCAAAAATCTTATATGCAGGTTTGTAATTCATATAGTAAAAGTACAAATGAACCTATGATTTGGTGGTTAGAAGCACTTCACCATGCTGAACAGAGCAAGGATTTCTCAAATGAGTTGATTAGGAAGATTGAAGAAGCAATTTCAGGAACTTCAAACAATTCGAAGTCACCAAGAATTGCTTCTCGTTTCAGAAGCATAACCTCTCTGAAGTATCAAATCCAGACAGGTTTGGATCAATTAGAAGCTTCTAGAAAAGTGCTACTTGATCGAATTTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAGGACATTGAACATGTGGGTAAATGTCGAAATTGCCAACCTGATTCTGATGGTCCGCCATGCATTCTGTGTGAACTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTTCTTAAGAACGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTAGATTTGCAGAAGAAAAATTTTGCACTTAATCGTTTTCTTTCAAAGCTATCACAATCTATTCACAGTTCAACAGTATCTGATATTGGCTATGAAGAATCAAAAAAAAGAAATGTTGGAGAAAGAGTTGTGGTTTCAAGATCAGCATCTCAATTGGAGGTTATTCTTGGAGTTTTAAAGAGCTATTGCAAGGTTCGGTTAGGAAGGAACAGTGTTTCAGCAGCGACCAAACATTTACATCTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCTTTAGCTCAAGCTCAATATTTGCGTGCCCATGATGAAATAAAGATGGCAGTTTCCAGGTTGCACCTGAGGGTAAATGAAAATGATAAGTCTCTTGATGCTTTAGGTGAAAATGAATTATTGGCGGCCAGCTCAAACTTTTCCCATGATAAGTTTATGTCGTCGGCCTTGTTGTCACAAATAAAAGGAAAACTCCGCTACTTAAAGGGCTTGGTACAGTCTAAACAAAAACTGCCATCGGGAAGTCCAGACAGTTCTTCATTCACTCAGGAGACTACTGCAATGTCAAATTATATCGAGGAGAAGGGTGCACTTATATCTAAACCTGACGAGGATTCATGCCCAGTTTGCCAAGAAAAACTAGGCAGTCAGAAAATGGTTTTTCAATGTGGGCATGTTACATGTTGTAAATGTTTGTTTGCTATGACTGAGCAAAAGCTTCAAGATAGCAAGTTTCATAAATGGGTGATGTGCCCAACATGTCGGCAGCATACTGATTTTGGAAACATTGCTTTTGCTGTTGATAGACAGAATGAATCTTCCAACTCTTCTCTGCTGCATAATATTGACAGCTGTGAAAAATGTGAATCTTCCATCAGTGTTAAAGGTTCTTACGGAACTAAGATCGAAGCAGTCACAAGAAGAATCTTGTGGATCAAGTCTACAGATCCTAAAGCAAAAGTGCTTGTATTTTCTAGTTGGAATGATGTTCTTGATGTATTAGAACATGCCTTTGCTGCCAATAACATCACCTACATCCGGATGAAGGGAGGCAGGAAATCACACGTTGCCATCAGTCAATTTAGAGGACAGCAGAATAGCAGAAAAGGATGTAGCAACTTGATATCCCAGGAATCAACATCAATATCTTTTCAGGTTTTATTAATTTTGATCCAACATGGAGCTAATGGCCTCAATCTTTTAGAAGCACAGCATGTGGTGCTCGTGGAGCCTTTACTCAATCCAGCTGCTGAAGCACAAGCAATTAGTCGTGTGCACCGTATTGGACAGAAAAATAAGACTCTCATTCATCGTTTCATTGTAAAAGGCACAGTTGAAGAGAGCATATATAAACTGAACAGAAGCAGAGGTAGTCATTCATTCATCAGTGGTAACAAAAAAAATCAAGACCAACCTGTGTTAACCCTGAAAGATGTTGAATCCTTGCTAGCAACGGCCCCATTAACAATGCCAGAAAAGGATGAAAATCCCGCTGCTAATCTAAGGCACTTGCCACCTTCAATAGCTGCGGCTATTGCTGCTGAGAGGAGACTCAATGAGCAAAGGACATGA 5031 0.3987 MGRRKSRPHRSGGITLETHATAGAGLDKQIIVESGEEAREDFGEIDKPYFVEVDRSSWLSNEHLDISEVVLTDLNVREGFSGFELSEDIYQNVQYSLRFRLCNVNHILGRIKLGHWPVLAYSDIHLEFVRRVTMDHMETCTVLLSGIFDGPDEGISGLIHLASMKFFTLRPVLGIRLSEDMFTIKLRVEVLKSAFDSCESLLDGSRQLWKKSMINVMSWLRPEIITPEILYGVGSYGSYMKMEDDLQIETGDDTCYTRKHVRFNPAAFYEAIRPSKSEPMLEDDIPDLLPELRPYQRRAAFWMVEREKKIAGGQGERERSHFHSPLCVPVDLIDTNSKMFINPFSGNISLYPDTAAPYVFGGILADEMGLGKTVELLACIFAHRRSVSESDIFIDSMLQVNGDQKVNFQRVKRDRVECACGAVSESLKYKGLWVQCDICDAWQHADCVGYSPKGKPLKSKQGSESKKFKTTIAVRDGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEINRHTRPGSLKTYVYEGVRDTSFNNTSLVDISELASADIVLTTYDVLKEDLSHDSDRHVGDRHFLRFQKRYPVVPTLLTRIYWWRVCLDEAQMVESNAAAASEMALRLYAKYRWCITGTPIQRKLDDLYGLLRFLKASPFNIYRWWTDVIRDPYEKGDIGAVEFTHKFFKQIMWRSSKEHVADELQLPSQEECLSWLTLSSVEEYFYQRQHETCVNYAHEIIESLRNDILNRRVPGAVSSDDFSDSYITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRSVVALNGLAAIAVMQKDFSQAALLYNEALTLAEENSEDFRLDPLLNIHIHHNLAEILPQTTKFSLKFPTKGKQFSGTSGLKTTRKHALEKVDNCFVKRKKGNGSDYLDFTIASEEPLNVTSSLSDNYLNRYREFDDVSISPLKYLIAECEDLKQKYLSMFSSKLSAIQQEFQKSYMQVCNSYSKSTNEPMIWWLEALHHAEQSKDFSNELIRKIEEAISGTSNNSKSPRIASRFRSITSLKYQIQTGLDQLEASRKVLLDRILEIDQTMEKPKEEDIEHVGKCRNCQPDSDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNFALNRFLSKLSQSIHSSTVSDIGYEESKKRNVGERVVVSRSASQLEVILGVLKSYCKVRLGRNSVSAATKHLHLFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRVNENDKSLDALGENELLAASSNFSHDKFMSSALLSQIKGKLRYLKGLVQSKQKLPSGSPDSSSFTQETTAMSNYIEEKGALISKPDEDSCPVCQEKLGSQKMVFQCGHVTCCKCLFAMTEQKLQDSKFHKWVMCPTCRQHTDFGNIAFAVDRQNESSNSSLLHNIDSCEKCESSISVKGSYGTKIEAVTRRILWIKSTDPKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKSHVAISQFRGQQNSRKGCSNLISQESTSISFQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKGTVEESIYKLNRSRGSHSFISGNKKNQDQPVLTLKDVESLLATAPLTMPEKDENPAANLRHLPPSIAAAIAAERRLNEQRT 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0840 1676 CDD DEXQc_SHPRH 292 691 - -
Glsi08g0840 1676 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 81 1675 - -
Glsi08g0840 1676 SUPERFAMILY FYVE/PHD zinc finger 414 486 IPR011011 -
Glsi08g0840 1676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 1611 IPR027417 -
Glsi08g0840 1676 CDD SF2_C_SNF 1451 1593 - -
Glsi08g0840 1676 SMART ring_2 1360 1407 IPR001841 -
Glsi08g0840 1676 Pfam SNF2-related domain 295 787 IPR000330 GO:0005524|GO:0140658
Glsi08g0840 1676 Gene3D - 1428 1656 IPR027417 -
Glsi08g0840 1676 Gene3D - 355 403 IPR038718 -
Glsi08g0840 1676 Gene3D - 485 712 IPR038718 -
Glsi08g0840 1676 SMART PHD_3 417 485 IPR001965 -
Glsi08g0840 1676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 678 IPR027417 -
Glsi08g0840 1676 SUPERFAMILY RING/U-box 1354 1412 - -
Glsi08g0840 1676 Pfam Helicase conserved C-terminal domain 1456 1582 IPR001650 -
Glsi08g0840 1676 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1457 1633 IPR001650 -
Glsi08g0840 1676 ProSitePatterns Zinc finger PHD-type signature. 418 484 IPR019786 -
Glsi08g0840 1676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 484 IPR013083 -
Glsi08g0840 1676 CDD PHD_TCF19_like 420 484 - -
Glsi08g0840 1676 SMART helicmild6 1485 1582 IPR001650 -
Glsi08g0840 1676 SMART ultradead3 288 660 IPR014001 -
Glsi08g0840 1676 ProSiteProfiles Zinc finger RING-type profile. 1360 1408 IPR001841 -
Glsi08g0840 1676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1354 1424 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0840 Glsi-ChrGlsi08 6302265 6319413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0840 492 785 RAD5 or RAD16-like Gene Family AT5G22750 32.441 3.57e-38 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi08g0840 SNF2_N 2.3e-85 CL0023