Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0839 ATGGAACTACGTATGACTTGGACAAGGATCTATCTATTTACCCTGAACAACCAACACCAACCGTCCGATCTCGCTCTTTCTCTCACTGCCCTTCCATTTATACCTTACCCCTCGTTGCTACTTTCTCTCTCTTGTCCTGATCTCATTTGCCGGACACTGCACAGCAGCCGCACGGGGCATAATCCTGGTGAGTTTTCACTGTGTTTGGGGTGTCCGATGGAGAAGGAGTTGGTTGAATTATATGAATCGGTGAAGAAAGCGGCGGATGCGGCCAACTCCACTGATACTGAACATGAAGAAAGTCGATGTCTTGATGCGTTCCAGCAGCTAAAAAAATTCCCTGTCAATTATCAAATTCTTGTATCCACCCAGGTGGGCAAACATCTAAAACATCTCACAAAACATCCGAGGAAGAAAATTCGGGCTTTTGCTATTGACCTGATTGAGATATGGAAAGACATAATTATCAAGGAAACAAGCAAAAGTAAGAATGGAAGCTCACATAATAATATTGTGTCGGCAAATGGGGAGAAAGCTAAGGCTGAGAAGATTCAGAAGACACATGTGAAGGTTGAGAAGGTTTCAAAGGATGACATTGTCAAGATTGAGAAAACAGATAGGAATGGTACATCAAGCGCAGTAAATCTGAAGAGGGTGCCAATAGCGGATGTCAAAAGTGAGAAAATTGATTCTGCAGCAAATGTTAAGGTAGAAAAGATAATTAAGGATGATAAGAAGAAGACATCATCAAGCCCTGCTGCTCCCCCAAAGCTGAAAACTATGGTTAAATCTAATGACGTGGTGCGAGACAAAATAAGGGAAATCCTCCAAGAAGCTTTCTCTAAGGTTTATGGAGAGGCTGATGAAGAAATGATTGATCAAGTTAATTCTTGTGACCCTATTCGGGTTGCTGTCACGGTGGAGTCTGTATTATTTGAAAAATGGGGACCTTCTAATGGGGCCCAAAAGGTCAAGTATAGGTCCTTAATGTTTAACCTTAAGGATCCAAATAACCCAGATTTCCGGAGAAAAGTTCTACTTGGAGAATTTCAACCGGAGCGGTTGATCAACATGAGCACGGCAGATATGGCTAGCGATCAAAGGAAGCAGGAGAATGAGAAACTCAAACAGAAAGCTTTATTTGAGTGTGAGCGTGGAGCCCAACCAAAAGCCACAACTGATCAATTTAGGTGTGGTCGATGTGGTCAAAGGAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACTTATGTCACCTGCGTAGCCTGTGATAACCGTTGGAAGTTCTGTTAG 1311 0.4287 MELRMTWTRIYLFTLNNQHQPSDLALSLTALPFIPYPSLLLSLSCPDLICRTLHSSRTGHNPGEFSLCLGCPMEKELVELYESVKKAADAANSTDTEHEESRCLDAFQQLKKFPVNYQILVSTQVGKHLKHLTKHPRKKIRAFAIDLIEIWKDIIIKETSKSKNGSSHNNIVSANGEKAKAEKIQKTHVKVEKVSKDDIVKIEKTDRNGTSSAVNLKRVPIADVKSEKIDSAANVKVEKIIKDDKKKTSSSPAAPPKLKTMVKSNDVVRDKIREILQEAFSKVYGEADEEMIDQVNSCDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRKVLLGEFQPERLINMSTADMASDQRKQENEKLKQKALFECERGAQPKATTDQFRCGRCGQRKCTYYQMQTRSADEPMTTYVTCVACDNRWKFC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0839 436 PIRSF TFIIS 73 436 IPR035100 -
Glsi08g0839 436 ProSitePatterns Zinc finger TFIIS-type signature. 398 433 IPR001222 GO:0003676|GO:0006351|GO:0008270
Glsi08g0839 436 SUPERFAMILY Zinc beta-ribbon 375 434 - -
Glsi08g0839 436 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 73 170 IPR035441 -
Glsi08g0839 436 ProSiteProfiles TFIIS central domain profile. 268 391 IPR003618 GO:0006351
Glsi08g0839 436 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 88 436 - -
Glsi08g0839 436 SUPERFAMILY Elongation factor TFIIS domain 2 253 366 IPR036575 GO:0006351
Glsi08g0839 436 SMART mid_6 270 374 IPR003618 GO:0006351
Glsi08g0839 436 CDD Zn-ribbon_TFIIS 389 435 - -
Glsi08g0839 436 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 70 170 IPR035441 -
Glsi08g0839 436 ProSiteProfiles Zinc finger TFIIS-type profile. 394 434 IPR001222 GO:0003676|GO:0006351|GO:0008270
Glsi08g0839 436 Pfam Transcription factor S-II (TFIIS) 396 434 IPR001222 GO:0003676|GO:0006351|GO:0008270
Glsi08g0839 436 Gene3D - 365 436 - -
Glsi08g0839 436 MobiDBLite consensus disorder prediction 161 187 - -
Glsi08g0839 436 SMART Cys4_2 396 435 IPR001222 GO:0003676|GO:0006351|GO:0008270
Glsi08g0839 436 Pfam Transcription factor S-II (TFIIS), central domain 265 382 IPR003618 GO:0006351
Glsi08g0839 436 FunFam Probable Transcription elongation factor S-II 365 436 - -
Glsi08g0839 436 ProSiteProfiles TFIIS N-terminal domain profile. 82 158 IPR017923 -
Glsi08g0839 436 SMART TFS2_5 80 157 IPR003617 GO:0005634
Glsi08g0839 436 Gene3D - 234 364 IPR036575 GO:0006351
Glsi08g0839 436 CDD TFIIS_I 81 155 - -
Glsi08g0839 436 NCBIfam transcription elongation factor S-II 87 436 IPR006289 GO:0003676|GO:0005634|GO:0006368
Glsi08g0839 436 Pfam TFIIS helical bundle-like domain 108 155 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0839 Glsi-ChrGlsi08 6296174 6300567 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi08g0839 TFIIS_M 7.5e-32 No_clan