Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0833 ATGCAAGCATTGTTGAACATGAGAGCTCTTTCCTGCTTGTTCCTGTTGCTTGTCATAGCTCCGGTTTTCGCGACCTCTGTCAACCCGTCTCTCAACGACGACGTTCTGGGGCTGATTGTATTCAAAGCTGATATACAAGATCCAGAGGGAAAACTGGCTTCCTGGAATGAAGATGATGAGAGTCCTTGTGGTTGGGTGGGTGTTAAATGCAGCACTAGATCCAACAGAGTCATGGAGATTAACCTTGAGGGATTCTCTCTTTCTGGTCGGATAGGTAAAGGCCTCCTCCGGCTGCAATTTTTACGCGAACTTTCTCTAGCGCGGAACAATCTCACCGGAATTATAAATCCTAATATGGCTCGGGTTTATAACCTTCGCGTGATTGACTTGAGCGATAACAATCTTTCAGGGGAGGTACCCGACGATTTTTTCCGACAATGCGGATCTCTAAAGGCTGTTTCTTTGGCAAAGAACAAGTTTTCAGGGAAGATTCCATCTAGTTTGAGCTCATGCTCTGCTATTGTTGCGGTTAATTTCTCGTTTAACCAGTTTTCGGGTTCTCTTCCTTCTCGGATTTGGAATTTGAGTGGACTTAGGTCACTGGATTTATCGGATAATTTGTTAGAGGGTGAGATTCCAAAGGGAATCGAAGGATTAAAGAACTTGCGAACAATTAATTTGTCAAAAAATCAGTTTTCTAAGATGGTTCCGGATGGAATTGGAAGTTGCTTGCTTTTGAAGTCCATTGATCTCAGTGATAATTTGCTTTCCGGTAGCCTTCCGGAGGATATGCAGGAACTTACATCCTGTAATTACCTTAGTTTACATGGAAACTCTTTTTCAGGCGAGATTCCTACGTGGATTGGAAAAATGAAAAGCCTTGAAACATTGGACCTCTCGCTGAATATATTTTCTGGTCAGGTGCCAAGTTCTATAGGAAATCTTCAGTCATTGAAGATAATGAATATTTCTGCAAATAATTTCACTGGTAATCTGCCAGAGTCCATGATAAATTGCACGAACCTTTTGGCCTTAGACGTCAGACAAAATTCAATGTCCGGGGATCTTCCATCATGGATTTTTAAGTCAGATTTGCAGAAGGTTTTGGCTTCAGAAAATAAATTGAGTGGGAGGCCGGAAAACCCTATGTATTACTTGGTGGAGGTTGCGGTTCAAAGTCTACAATTTTTGGATTTATCTGATAATGGATTTTCTGGCGAAATTGCATCTGTTATTGCAGTTTTAAGCAGCTTGCAGCACTTGAATTTGTCAAAGAACTCTCTAAGTGGCCCTATACCAGCTGCCATTGGAGAATTAAAATCGCTGTATAGTCTTGATTTGAGTGGGAATCATCTAAACGGAGGCATTCCTTCGGAAATAGGAGGAGCAGTCTCTTTAAAAGAATTGAGATTACAACAGAACTATTTAGTGGGGAAAATTCCAACCTCAATTGCAAACAGCTCTTCATTAACGACTTTGATTCTATCACAGAACAGATTGACTGGCCCGATACCTGCAACATTTGCAAGACTTACCAACCTACAATTTGTGGACTTATCATTTAACAACCTTACTGGAAACCTTCCCAAGGAATTGGCCAATCTGCCCAACCTTATTTCCTTCAATTTATCTCACAACAATCTCCAGGGTGAACTTCCAGCTGGTGGCTTTTTCAACACCATTCCGCCTTCCTCTGTTTCTGGCAATCCATCTCTTTGTGGCTCGACACTTAATAAATCATGCCCTGTTGTCCTTCCAAAGCCCATTGTTCTAAATCCCAATACTACAACTGACACTGCTCCAGGTTCACTGCGCCCAACTTTGGGTCACAAAAGAATCGTTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTGCCATCATTGTTCTAAATCTCCGTGTTCGGTCCTCCATATCTCAATCTGCAGCTGCCCTCACATTTTCTGCAGGGGATGAATTCAGCCATTCCCAAACTACGGATGGCAACTCTGGCAAGCTTGTCATGTTTTCAGGAGAGCCTGACTTCAGCACTGGAGCACATTCTTTGCTTAATAAGGATTGTGAAATTGGGCGTGGAGGGTTTGGAGCTGTGTACCGAACAGTTGTTAAAGATGGGCGTTCAGTTGCAATCAAGAAGCTCACTGTATCAAGCCTAGTCAAGTCCCAAGAAGATTTTGAAAGAGAAGTGAGGGAATTGGGAAAAGTCAGACACCAAAATCTTGTGGCACTCGAAGGTTATTATTGGACACCATCTCTACAGCTCCTCATATATGAATTTGTTTCTGGTGGTAGTCTATATAAGCTTATCCATGAAGGATCAGGTGGAAACTTCCTCTCATGGAACGAGAGGTTTAATGTAATTCTAGGAACAGCGAAAGCCTTGGCTCACTTGCACCGCTTGAACATTATTCACTATAACATTAAGTCAACCAATGTCCTCATTGACAGCTATGGTGAACCTAAAGTGGGGGACTTTGGCCTAACAAGATTGTTACCAATGCTTGACCGTCATGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGCTACATGGCACCGGAGTTTGCCTGTAAAACAGTGAAGATAACAGAGAAATGTGATGTATACGGGTTTGGAGTTTTGGTTTTGGAGGTGATTACAGGGAAGAGGCCAGTGGAATACATGGAGGATGACGTGGTGGTACTGTGTGACATGGTCAGAGGAGCTTTAGAAGAAGGCACGGTAGAGGAATGTATTGACAAGGGGCTACAGGGGAAGTTTCCAGCTGAGGAAGCCATTCCTGTGATGAAGCTAGGCTTAATATGTACTTCACAAGTTCCATCCAATCGGCCAGACATGGGAGAGGTAGTTAATATATTGGAGCTAGTAAAATGTCCCTCGGAAGGACAAGATGAGTTGGGAATTGGGATGAATTAA 2940 0.4279 MQALLNMRALSCLFLLLVIAPVFATSVNPSLNDDVLGLIVFKADIQDPEGKLASWNEDDESPCGWVGVKCSTRSNRVMEINLEGFSLSGRIGKGLLRLQFLRELSLARNNLTGIINPNMARVYNLRVIDLSDNNLSGEVPDDFFRQCGSLKAVSLAKNKFSGKIPSSLSSCSAIVAVNFSFNQFSGSLPSRIWNLSGLRSLDLSDNLLEGEIPKGIEGLKNLRTINLSKNQFSKMVPDGIGSCLLLKSIDLSDNLLSGSLPEDMQELTSCNYLSLHGNSFSGEIPTWIGKMKSLETLDLSLNIFSGQVPSSIGNLQSLKIMNISANNFTGNLPESMINCTNLLALDVRQNSMSGDLPSWIFKSDLQKVLASENKLSGRPENPMYYLVEVAVQSLQFLDLSDNGFSGEIASVIAVLSSLQHLNLSKNSLSGPIPAAIGELKSLYSLDLSGNHLNGGIPSEIGGAVSLKELRLQQNYLVGKIPTSIANSSSLTTLILSQNRLTGPIPATFARLTNLQFVDLSFNNLTGNLPKELANLPNLISFNLSHNNLQGELPAGGFFNTIPPSSVSGNPSLCGSTLNKSCPVVLPKPIVLNPNTTTDTAPGSLRPTLGHKRIVLSISALIAIGAAAVIVIGVIAIIVLNLRVRSSISQSAAALTFSAGDEFSHSQTTDGNSGKLVMFSGEPDFSTGAHSLLNKDCEIGRGGFGAVYRTVVKDGRSVAIKKLTVSSLVKSQEDFEREVRELGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKLIHEGSGGNFLSWNERFNVILGTAKALAHLHRLNIIHYNIKSTNVLIDSYGEPKVGDFGLTRLLPMLDRHVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVITGKRPVEYMEDDVVVLCDMVRGALEEGTVEECIDKGLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELVKCPSEGQDELGIGMN 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0833 979 SUPERFAMILY L domain-like 297 565 - -
Glsi08g0833 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 29 961 - -
Glsi08g0833 979 Gene3D Ribonuclease Inhibitor 189 284 IPR032675 -
Glsi08g0833 979 Gene3D Ribonuclease Inhibitor 285 383 IPR032675 -
Glsi08g0833 979 Gene3D Ribonuclease Inhibitor 462 583 IPR032675 -
Glsi08g0833 979 SUPERFAMILY L domain-like 50 380 - -
Glsi08g0833 979 ProSiteProfiles Protein kinase domain profile. 692 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0833 979 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 686 768 - -
Glsi08g0833 979 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 769 970 - -
Glsi08g0833 979 CDD STKc_IRAK 698 962 - -
Glsi08g0833 979 SUPERFAMILY Protein kinase-like (PK-like) 693 966 IPR011009 -
Glsi08g0833 979 Pfam Protein tyrosine and serine/threonine kinase 694 961 IPR001245 GO:0004672|GO:0006468
Glsi08g0833 979 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515
Glsi08g0833 979 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515
Glsi08g0833 979 Gene3D Phosphorylase Kinase; domain 1 685 768 - -
Glsi08g0833 979 SMART LRR_typ_2 122 146 IPR003591 -
Glsi08g0833 979 SMART LRR_typ_2 511 534 IPR003591 -
Glsi08g0833 979 SMART LRR_typ_2 439 463 IPR003591 -
Glsi08g0833 979 SMART LRR_typ_2 219 243 IPR003591 -
Glsi08g0833 979 SMART LRR_typ_2 415 438 IPR003591 -
Glsi08g0833 979 SMART LRR_typ_2 535 559 IPR003591 -
Glsi08g0833 979 SMART LRR_typ_2 195 218 IPR003591 -
Glsi08g0833 979 Gene3D Ribonuclease Inhibitor 32 188 IPR032675 -
Glsi08g0833 979 Gene3D Ribonuclease Inhibitor 384 461 IPR032675 -
Glsi08g0833 979 Pfam Leucine rich repeat 465 524 IPR001611 GO:0005515
Glsi08g0833 979 Pfam Leucine rich repeat 393 452 IPR001611 GO:0005515
Glsi08g0833 979 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 311 585 - -
Glsi08g0833 979 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Glsi08g0833 979 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 32 310 - -
Glsi08g0833 979 Gene3D Transferase(Phosphotransferase) domain 1 769 973 - -
Glsi08g0833 979 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0833 Glsi-ChrGlsi08 6253033 6256183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0833 13 975 Receptor kinase-like Gene Family AT3G56370 67.322 0.0 1263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Glsi08g0833 PK_Tyr_Ser-Thr 2.7e-39 CL0016