Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0828 ATGGCTCTTCGTTATAGTTCTCATCGCCGTCTGCTTGACACACATTCAAACCCAGCTGCAGCAGATAATGTATACAGGGGAAGGATGTCTTACAGAAGTGATGCTAATTTTGACTCCAGCATGGTCATTATCTTAGCAGCCTTGCTCTGTGCACTAATATGTGCTCTGGGGCTCAATTCAATTGTACGCTGCGCTCTAAGGTGCAGCCGTAGGGCTGCTTTCGAGACTCCGGATGAGGCAGCAGCTCGATTAGCAGCAAAAGGGATGAAAAAGAGTGCAGTGCGTCAGCTCCCTATAGCTGTTTATGGTTCAGGTGCTGAAATCACAGCAACAGATTGTCCAATTTGCCTTGGGGAGTTTGCGGATGGGGAGAAAGTGAGAGTGCTTCCAAAATGCAACCATGGATTCCATGTAAGCTGCATAGACACATGGCTGCTCTCACACTCCTCTTGCCCTACTTGCAGGCAGTCTTTGTTTCACCAACCGACGACTCCTCAAGCCGTCGCAGCGGATGAGGCTGGCTGA 525 0.4971 MALRYSSHRRLLDTHSNPAAADNVYRGRMSYRSDANFDSSMVIILAALLCALICALGLNSIVRCALRCSRRAAFETPDEAAARLAAKGMKKSAVRQLPIAVYGSGAEITATDCPICLGEFADGEKVRVLPKCNHGFHVSCIDTWLLSHSSCPTCRQSLFHQPTTPQAVAADEAG 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0828 174 CDD RING-H2_EL5-like 112 155 - -
Glsi08g0828 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 160 IPR013083 -
Glsi08g0828 174 SMART FANCL_C_2 109 164 - -
Glsi08g0828 174 FunFam RING-H2 finger protein ATL72-like 80 159 - -
Glsi08g0828 174 Pfam Ring finger domain 112 155 IPR001841 -
Glsi08g0828 174 SUPERFAMILY RING/U-box 96 162 - -
Glsi08g0828 174 SMART ring_2 113 154 IPR001841 -
Glsi08g0828 174 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Glsi08g0828 174 PANTHER RING-H2 FINGER PROTEIN ATL78 16 161 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0828 Glsi-ChrGlsi08 6238405 6238929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0828 9 169 C3H Transcription Factor Family AT3G10910 56.647 1.24e-59 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0828 08 6238405 6238929 Glsi08g0828 08 6238405 6238929 ECH