Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0820 ATGTTAAGCCTAAGGGGTACAATTCTTTGGAATCTACTAACGTGGGCTAATATCCGAGGGCTTTCTGGTCAAAATAGTTTCATCAATAAGGCGTATAATCTAGCATCAACTCTGAGCAACAGACAAACAAGAGAAGCAGATATGGGCAGTGTTAGTAATATTGGCTTCTCTTCAGTATTCAGAGCATTTTCCCTGACTGATGTGATTTCAAAGCAGAGGAAGAAGAAATCGGCATGCAGTTTTATGGTTCCGATCAATCCCGTTAGGTTGAATCACATCTACTGCAAACTACCAGAGAGTGGGATTGAGGAGAACCCCACTAGCAGGAGGGCCTCTAATTCCAAGAACAGGATGGAGGAGTACAATATAGCTATGAATAGGATGATGAGGAACCCTTATGAGTATCACCACGATCTGGGTATGAATTATACACGTATAACTGATAATTTGATTGTGGGCTCCCAGCCACAGAAACCTGAAGATATAGATCACCTCAAAAAGGAAGAGGGTGTAGCATACATTCTAAACTTGCAACAGGATAAGGATGTGGAGTATTGGGAAATAGATTTACAGTCAATTATACGAAGATGTCGTGAACTCCGTATTCGTCACATGAGGAGGCCTGCAAAAGATTTTGATCCAAACTCCCTGCGAAATGAACTGCCAAAAGCGGTTTCATCATTAGAATGGGCTGTCTCCGAGGGAAAAGGAAGAGTGTATGTGCATTGCACAGCTGGACTTGGAAGAGCTCCGGCGGTGGCAATTGCTTATTTGTTCTGGTTCTGTGGCATGAATTTAAATGCAGCGTATGATATGCTAACTGCAAAGAGACCTTGTGGACCCAATAAAAGAGCAATACGCGGAGCTACTTATGACTTGGCTAAGAATGATACATGGAAGGAGCCATTTGAGAGTCTTCCAGAACATGCATTTGAGGATATAGCAGACTGGGAGAGGAAATTGATTCAAAGTCGTGTCCATTCTCTTCGTGGAACTTGA 999 0.4264 MLSLRGTILWNLLTWANIRGLSGQNSFINKAYNLASTLSNRQTREADMGSVSNIGFSSVFRAFSLTDVISKQRKKKSACSFMVPINPVRLNHIYCKLPESGIEENPTSRRASNSKNRMEEYNIAMNRMMRNPYEYHHDLGMNYTRITDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDKDVEYWEIDLQSIIRRCRELRIRHMRRPAKDFDPNSLRNELPKAVSSLEWAVSEGKGRVYVHCTAGLGRAPAVAIAYLFWFCGMNLNAAYDMLTAKRPCGPNKRAIRGATYDLAKNDTWKEPFESLPEHAFEDIADWERKLIQSRVHSLRGT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0820 332 CDD DSP_laforin-like 141 288 IPR045204 GO:0019203
Glsi08g0820 332 Pfam Dual specificity phosphatase, catalytic domain 163 282 IPR000340 GO:0008138|GO:0016311
Glsi08g0820 332 SMART dsp_5 142 292 IPR020422 GO:0006470|GO:0008138
Glsi08g0820 332 ProSiteProfiles Dual specificity protein phosphatase domain profile. 142 299 IPR020422 GO:0006470|GO:0008138
Glsi08g0820 332 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 139 284 IPR029021 -
Glsi08g0820 332 Coils Coil 111 131 - -
Glsi08g0820 332 Gene3D Protein tyrosine phosphatase superfamily 125 332 IPR029021 -
Glsi08g0820 332 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 125 332 - -
Glsi08g0820 332 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 219 278 IPR000387 GO:0016311|GO:0016791
Glsi08g0820 332 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 84 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0820 Glsi-ChrGlsi08 6198546 6201561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0820 75 332 Protein tyrosine phosphatase (PTP) family AT3G10940 75.676 6.37e-144 406