Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0793 ATGGCTTCTCCACCGACCATGCCGATCTCCAACCCCCAGTCTAACAGCGGCGCCGTCGGTTCCCAATCTCAGCCACCAATTGCTACGCCTGCCTTTCGAGCTTTCATCTCACGCCTGTCGTCCACCGTTCGCCGGGGTTTCTCCCAGCGCCGCCCGTGGTACGAGCTCATCGACCGGACCTCAATGTCCCGGCCTGACAACCTCTCGGAAGCATATTCTAGGATCCGCAAGAACTTTTCCTACTTTCGCGTTAACTACATAACCCTACTGGCCCTAGTATTGGCCGGCTCTCTTATCTCCCACCCTTTCTCGCTCCTCGTTCTTTTCGGCCTCCTCGCATCCTGGGCTGTACTGTACCTCTTCCGGCCCTCCGATCAGCCCCTGGTCGCCTTTGGTCGTAACTTCTCTGAACGCGAAATCTTGGGCATTTTGGTGGTGTTAACAGTGTTCGTTGTCTTCCTCACCAACGTTGGATCTCTCTTGATTTCGGCTTTGATGGTTGGTTTGGCGATCGTGTGCGCGCACGGTGCATTTAGAGACCCTGAGGACTTGTTTCTTGACGATCAAGAGCCAAGCAGTACCGGCTTCTTGTCATTCCTCGGCGGCGCTGCCTCTTCTGCTGCTGCAGCCGCCGTGCCTGCTTGCTTGGCTGATTTTGTTGGTGATCATTTATGTGAACATCTACAGATCATTAGAAAGGGTTTTAAAGTTTGTAATAATAGACTTCCTCTGATATGCTCTCTGTTCTTATCTTATATTGCTTCCAGTGTAGTTGTATCTTTGGAGTATTTCAATTATGGAGTTCGTATTCTATTTGAAGTGTCATTATTCAATTTTGACCAAAACTCTCGTCAGATTTTGAAACTGGGGATGAGGGGCTCTCCAGATTGGCATCATATTTCCGATAAGAAGAAAGAAAAATGGAAGACCCCATCTAAAACCCACAATCCTTGTCATTTTTTCTGGTTGTTTATTGATTTCCTCTGGGTCCAATGTCTCTGGTTTCTTCTGCTCCCAACTTGTGTTAAACCAGTTTTCGGTGAAGGGGAGCGTTGGGATGGAGTGGTTGTGACAGAATCAAACTTCTTAGCACTTCAAGCATTCAAGCAAGAGCTGGTTGATCCCAAAGGCTTCTTACAAAGTTGGAATGACAGCGGCTATGGAGCTTGTTCTGGAGGTTGGGTTGGCATTAAGTGTGCTCAGGGACTAGTGATTGTTATTCAGCTCCCATGGAAAGGGTTGGGGGGGCATATCACCGAGAGGATTGGCCAACTTCAAGGGCTTCGGAAGCTTAGTCTTCATGATAACCAAATTGGTGGTTCAATCCCTTCAGCATTGGGACTTCTTCCCAACCTTAGAGGGGTTCAACTCTTCAACAATCGGCTAACTGGGTCTATCCCTCCTTCATTAGGTTCCTGCCCTTTGCTTCAGTCTTTAGACCTCAGTAACAATCGACTCCAAGGTAGAATCCCTGACAACCTTGCGAATTCTACTAAGCTTTATTGGCTTAATTTGAGCTTCAATTCCTTCTCGGGCACAATCCCAGCTTCTCTCTCCCGCTCAGCTTCTCTCACCTTCCTTTCTCTCCAACAGAATAATCTCTCTGGCTCTATCCCAAACTCTTGGGGTGGTAATCTGAAAAATGACTTCTTTCGGCTTCAAAACTTGATCCTAGATCAAAATTTCTTCTCTGGAAGTATTCCAACCTCTTTGGGCAGCTTAAGCGAACTCACAGAGATTTCCCTTAGTCATAACCAATTTACTGGAGCTATACCAAATGAAATAGGGAGCCTTTCTAGGCTTAGAAGATTAGATGTTTCTAATAATGCCTTGAATGGAAGCTTGCCTGCTACTCTCTCTAGTTTATCCTCACTCATTATATTGAATGTAGAGAACAACCACCTTGATGAACAAATCCCTGAAGACCTAGGGAGACTACATAATCTTTCTGTTCTAAGTTTAGGCAGAAACCTATTCAGTGATCACATCCCTGAAAGTATTGGAAACATTTCTACGCTTACACGGCTTGATTTGTCGCTAAATAGTCTCAGCGGAGAAATTCCAATTTCCTTTGACAATTTACGTAGTCTTAGTTTTTTTAATGTTTCTTACAATAACCTCTCTGGTCCTGTCCCCAATCTGCTTGCCCAGAAATTTAACTCGAGCTCATTTGTGGGAAATATTCAATTATGTGGGTACAGTCCTTCAACCCCATGTCCTTCGCATGCACCATCTGAAGGAGTCCATGCTCCATCTCCGGAAGTGTCAAAACACCATCATCGGAAACTTAGTGCCAAAGACATGATCCTCATAGCAGCAGGTGCTCTCCTCATAGTCTTGATGGTACTCTGTTGCATCCTCTTATTCTGCCTGATTAGAACAAGAGCAGCATCAAGGGAAGAAAATGGCCGGGTCATAGGAAGGGCAGCTGCTCCCAGGACGGAAAAAGGGGTTCCCCCCATTGCTGGTGAAGTCGAAGCGGGTGGGGAGGCCGGGGGGAAACTAGTCCATTTTGATGGGGCAATGGCTTTTACTGCTGATGATCTCTTGTGTGCAACAGCTGAAATAATGGGGAAGAGCATTTATGGAACTGTCTATAAAGCTACGTTGGAGGATGGAAGTCAAGTTGCCGTGAAGAGACTGAGAGAAAAGATCACTAAAAGTCAGAGAGAATTCGAGTCCGAAGTTAGTTTTCTAGGGAAAATTCGACACCCAAATATTTTGGCACTAGGGGCCTATTACTCGGGACCCAAAGGAGAAAAGCTTCTGGTTTTCGATTACATGCCTAAAGGAAGTCTTGCTGCTTTCCTACTTGCTCGTGGGCGTGAAATAGCCATTGATTGGCCAACAAGGATGAAAATAGCACAGGGCATGGCTCGTGGCTTATTCTACCTTCATTCCCATGAGAACATTATACATGGGAACCTCACATCCAGCAATATCCTGCTTGATGAGAATACAAATGCTAAAATCGCAGATTTTGGTCTCTCAAGGTTAATGACAACTGCTGCTAGCTCTAACGTGATTGCTACTGCAGGAGCATTAGGCTACCGAGCACCCGAGCTCTCGAAGCTTAAGAAAGCCAACATAAAAACTGATGTCTACAGCCTTGGTGTTATCTTGCTGGAACTCTTAACAGGGAAGTCAGCCGCTGAGCCTCAGAATGGCGTAGCTTTACCTCAATGGGTTGCTTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTCGAAATCGAGTTGATGAGAGATGCATCTACAGTTGGCGATGAGTTGCTGAACACATTGAAGCTTGCTATGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCAACAAGTGCTCCTGCAACTAGAAGAGATTAGACCAGAGAGATCAATCAGTTCTGGGGATGATAGAGCCATCCCTTCTACCAGTGATTAA 3426 0.46 MASPPTMPISNPQSNSGAVGSQSQPPIATPAFRAFISRLSSTVRRGFSQRRPWYELIDRTSMSRPDNLSEAYSRIRKNFSYFRVNYITLLALVLAGSLISHPFSLLVLFGLLASWAVLYLFRPSDQPLVAFGRNFSEREILGILVVLTVFVVFLTNVGSLLISALMVGLAIVCAHGAFRDPEDLFLDDQEPSSTGFLSFLGGAASSAAAAAVPACLADFVGDHLCEHLQIIRKGFKVCNNRLPLICSLFLSYIASSVVVSLEYFNYGVRILFEVSLFNFDQNSRQILKLGMRGSPDWHHISDKKKEKWKTPSKTHNPCHFFWLFIDFLWVQCLWFLLLPTCVKPVFGEGERWDGVVVTESNFLALQAFKQELVDPKGFLQSWNDSGYGACSGGWVGIKCAQGLVIVIQLPWKGLGGHITERIGQLQGLRKLSLHDNQIGGSIPSALGLLPNLRGVQLFNNRLTGSIPPSLGSCPLLQSLDLSNNRLQGRIPDNLANSTKLYWLNLSFNSFSGTIPASLSRSASLTFLSLQQNNLSGSIPNSWGGNLKNDFFRLQNLILDQNFFSGSIPTSLGSLSELTEISLSHNQFTGAIPNEIGSLSRLRRLDVSNNALNGSLPATLSSLSSLIILNVENNHLDEQIPEDLGRLHNLSVLSLGRNLFSDHIPESIGNISTLTRLDLSLNSLSGEIPISFDNLRSLSFFNVSYNNLSGPVPNLLAQKFNSSSFVGNIQLCGYSPSTPCPSHAPSEGVHAPSPEVSKHHHRKLSAKDMILIAAGALLIVLMVLCCILLFCLIRTRAASREENGRVIGRAAAPRTEKGVPPIAGEVEAGGEAGGKLVHFDGAMAFTADDLLCATAEIMGKSIYGTVYKATLEDGSQVAVKRLREKITKSQREFESEVSFLGKIRHPNILALGAYYSGPKGEKLLVFDYMPKGSLAAFLLARGREIAIDWPTRMKIAQGMARGLFYLHSHENIIHGNLTSSNILLDENTNAKIADFGLSRLMTTAASSNVIATAGALGYRAPELSKLKKANIKTDVYSLGVILLELLTGKSAAEPQNGVALPQWVASIVKEEWTNEVFEIELMRDASTVGDELLNTLKLAMHCVDPSPSARPEVQQVLLQLEEIRPERSISSGDDRAIPSTSD 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0793 1141 FunFam Leucine-rich repeat receptor-like kinase 360 469 - -
Glsi08g0793 1141 ProSiteProfiles Protein kinase domain profile. 851 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0793 1141 FunFam Os07g0541700 protein 928 1014 - -
Glsi08g0793 1141 Pfam PRA1 family protein 47 188 IPR004895 -
Glsi08g0793 1141 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 470 546 - -
Glsi08g0793 1141 Gene3D Transferase(Phosphotransferase) domain 1 929 1135 - -
Glsi08g0793 1141 SUPERFAMILY Protein kinase-like (PK-like) 855 1123 IPR011009 -
Glsi08g0793 1141 CDD STKc_IRAK 857 1122 - -
Glsi08g0793 1141 Pfam Leucine rich repeat 552 611 IPR001611 GO:0005515
Glsi08g0793 1141 Gene3D Ribonuclease Inhibitor 516 614 IPR032675 -
Glsi08g0793 1141 SMART LRR_typ_2 474 497 IPR003591 -
Glsi08g0793 1141 SMART LRR_typ_2 425 448 IPR003591 -
Glsi08g0793 1141 SMART LRR_typ_2 574 597 IPR003591 -
Glsi08g0793 1141 SMART LRR_typ_2 622 646 IPR003591 -
Glsi08g0793 1141 SMART LRR_typ_2 598 621 IPR003591 -
Glsi08g0793 1141 SMART LRR_typ_2 449 473 IPR003591 -
Glsi08g0793 1141 SMART LRR_typ_2 694 717 IPR003591 -
Glsi08g0793 1141 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 552 1122 - -
Glsi08g0793 1141 Gene3D Ribonuclease Inhibitor 615 741 IPR032675 -
Glsi08g0793 1141 SUPERFAMILY L domain-like 400 733 - -
Glsi08g0793 1141 Pfam Protein tyrosine and serine/threonine kinase 855 1118 IPR001245 GO:0004672|GO:0006468
Glsi08g0793 1141 Gene3D Phosphorylase Kinase; domain 1 857 928 - -
Glsi08g0793 1141 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 547 743 - -
Glsi08g0793 1141 PRINTS Leucine-rich repeat signature 598 611 - -
Glsi08g0793 1141 PRINTS Leucine-rich repeat signature 476 489 - -
Glsi08g0793 1141 Pfam Leucine rich repeat N-terminal domain 363 399 IPR013210 -
Glsi08g0793 1141 MobiDBLite consensus disorder prediction 1 25 - -
Glsi08g0793 1141 Gene3D Ribonuclease Inhibitor 361 515 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0793 Glsi-ChrGlsi08 6056240 6061982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0793 352 1124 Receptor kinase-like Gene Family AT3G51740 64.706 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi08g0793 PK_Tyr_Ser-Thr 7.8e-42 CL0016