Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0789 ATGGGTGCTTATGATCATGGTTCCAACATCACTTCTCTTCCCTTGGATTCTTCTAGGAAGAGGAAAAGTCGGAGTAGACGGGATGGTTCTAAATCTGTGGCGGAGACTCTGGCAAAGTGGAAAGAATATAATGAGAATCTTGAATCTTGTAATGGTGAGAGTAAACCAAGTCGCCGAGCTCCTGCTAAGGGTTCAAAGAAAGGATGTATGAAAGGTAAAGGAGGGCCTGACAATTCACGATGTAATTACAGAGGCGTTAGGCAGAGAACATGGGGGAAATGGGTTGCTGAGATACGGGAACCAAACAGAGGAAGTAGGCTGTGGTTGGGTACCTTCCCTACTGCCTATGAAGCTGCTCTTGCATATGACGAAGCTGCTAGAGCCATGTACGGTCCTAGTGCCCGCCTCAACTTTCCACACATATCGGATTATACTTCTTGCAAGGAATCATTAAAGGACTGTTCCCCGGCTACCACTTTATCAAGTTCTTCAGTAGCAACTCCTGCAGGTTCTGACACAACTACCATATCAAACCATTCTGAGGTCTGCGCAGCTGAGGATGTTAAGGTGAAATGCCAACCGATCAAAACAAATGATAGGGTTAATGCTTATCACGAACCTGATGAAATTGCCTCCCCAATTAGCAAAGTGAAGTCAGAGCCAAAGGAGGAGCCCGCTGATCTTACAGACCATGAGGGCAGGGTTAGCCTAGAAGCACATGACATCGAAAAGGATGCGATGGATGAAAGTAAAGATCGAATGGACTATTCTTGGCTTGATGTTAATGATTTCGAGGAGGATTACTTGCAGAATTTCTCTATGGATGAGATGTTTGATGTGGATGAACTTTTGGGGGCGATGGACAATAATCCAATTGGTGACTCGGAAATGATGCAAAGTTTTGGTTTAGGTCTAAGGGGTTTTCCTATAGACGGAAATCTTCAGAGTGAGATGCCGTCAAGTTTTTCCTATCAATTGCAAAACCCAGATGCCAAGCTGCTGGGAAGTCTACAACATATGGAACAGACACCGTCGGGTGTTGATTATGGATTAGATTTCTTAAAAACAGGAGAGCCAGAGGACAATAATGGTAGGGGGGAAGAGCAGCAATTTTTTGATTTTGGATCATCTGATCTGTAA 1140 0.4439 MGAYDHGSNITSLPLDSSRKRKSRSRRDGSKSVAETLAKWKEYNENLESCNGESKPSRRAPAKGSKKGCMKGKGGPDNSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAYEAALAYDEAARAMYGPSARLNFPHISDYTSCKESLKDCSPATTLSSSSVATPAGSDTTTISNHSEVCAAEDVKVKCQPIKTNDRVNAYHEPDEIASPISKVKSEPKEEPADLTDHEGRVSLEAHDIEKDAMDESKDRMDYSWLDVNDFEEDYLQNFSMDEMFDVDELLGAMDNNPIGDSEMMQSFGLGLRGFPIDGNLQSEMPSSFSYQLQNPDAKLLGSLQHMEQTPSGVDYGLDFLKTGEPEDNNGRGEEQQFFDFGSSDL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0789 379 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Glsi08g0789 379 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Glsi08g0789 379 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Glsi08g0789 379 MobiDBLite consensus disorder prediction 1 34 - -
Glsi08g0789 379 Gene3D AP2/ERF domain 82 141 IPR036955 GO:0003700|GO:0006355
Glsi08g0789 379 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Glsi08g0789 379 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Glsi08g0789 379 MobiDBLite consensus disorder prediction 48 82 - -
Glsi08g0789 379 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 350 - -
Glsi08g0789 379 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Glsi08g0789 379 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Glsi08g0789 379 MobiDBLite consensus disorder prediction 17 34 - -
Glsi08g0789 379 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Glsi08g0789 379 MobiDBLite consensus disorder prediction 355 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0789 Glsi-ChrGlsi08 6035872 6037011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0789 8 379 AP2-EREBP Transcription Factor Family AT2G40340 42.063 5.72e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g0789 AP2 7e-15 CL0081