LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g0788	ATGGAGAATTTAGCGGGTTTGACTGAGTTCAGTATCTGGGTTTTCCTGCAAAATCGAAATGGCTATGGTAGATTTATTTCTCTGCATTTGAAGATAACATCCGATGCTGATCACGTGATTGATCGACCCGTTGGGGTCTACAAGTTTATATATTTCTCTGCGACATTTGAGGCATTTCTCTCTGGCTCATGGCAAGCTTTGGAGTTCATAACAATTGAGGCGGGAACAATGGCCTTCCGTTCTATAGATAATAACTATAAGGTTATGGATAAAGGCCCCTTCTCAGACATTCGGATAAGGTCTAGGAAAGCTACTTTATCGGATTGCTCCTGCTTTTTAAGACCTGGAATTGACATATGTGTGCTCATAGCCTCTCAACATGCTGATAGCTCTGATGAAAATAGTCTTAATCCTGTGTGGGCTGATGCTAAAATAAGTTCTATACAGAGAAAGCCACACGAATCTGAGTGCTCATGTCAGTATTACGTCAACTTCTATGTTAATCAAGGTTCTCTTGGTACAGAGGTAAGAACCCTTAGTAAGGAGATTAAAGTAGTTGGAATAAATCAAATCTCCATCCTCCAGAAGCTTGAGCATAGTCCTTGTGAAGATCAGCACTATCGGTGGGATTCATCTGAGGACTGCTCTGCAGTACCACAAACTAAATTGCTTTTAGGAAAATTTTTATCTGATATTTCATGGTTAGTTGTCACATCAGTTTTGAAGCAGGTTTCATTCTGTGTGAAATCTGTAGGTAACAAGATTGTGTATCATATTCTGGGAGCTGATAATAATAGCTCGCCATTGAATTCTGGTTCTCATTTAACCGTTATAAATTTCAAAGTAGACAACGGCATGTTAGTGCCCATTGTTGCTCAACTTGTTCCATCCGATACCAATAAAGTCGACCATGCACTTGACTCCCATGAAGATGAAGCATCTCCATCTTATAATCATGAGGGTTTGCGTCGCTCTAAACGTCGGAATGTACAACCTGATCGTTACCTTGGTTGTGATAATATTTCTGAATTGGATGTTGGTTTTGTTCGAACCAGGCCATACAAGATTGATAAATGGAAAGATGATGACGAAGATGATGAATTGTCACTGCCATTATCATGCCTGTTTGGTTTGCAAGAAAATAATCTATTAGAGGATGTTAACAGTAGGGAAAGGTTCAATAAGAGGAAGTCCCGCCAGAAGCTTCTCGTATACGAAAGGAGGACTAAATCCAGGGAGTTAAAGTCAGATGATGATGATGATCAAAAAGAGCATCAATCTCAACTTGCTATTGTTCCTTTCCCTGATGAAGTTGATCCAATAGCCTTTGAGCATTATGATCTCAATGCCAAGGTTACTAAATATTATGCACATGAAAATGTTGAAATTTCTACCAAATATTATCCCCTCACTAGTAGCCCTGAACTAAAGAGGAACAATATTGATCTTCTAACATTTGAACCCTATAACCATCCTGCCAAGATTCCTGATCTTGAAAATTATGCAGAAGAGATTGATGATATATCTTCCAGATGTTATTATAGTTATGGCACGCCTAACTTGCAGAGGAAGAATGTGCTTGGCCTGGATGATATGGATTTCAAAAGTAGATGGGAAGGGATAAATTCTGGTAAAGGAGTTCAAGGGAGAAAAAACCGTTCAACGTATTCAAGAAGTAGACAACTTGGTCAAGAAAGAACTTACAAAGACAGATCCTTAAGTGCAGGTGCTTACAACAAATTGATAGATTCATATTTAAAGAATATGGATACAAAACCGTCCGAAGTAGAGCCACCTATTACTGACCAGTGGAAACAATTCAAGGAAGCAAGCAACTTTGGGCAAAAGAGGGAAACAGAGGCATCCCAAGTAGAGGATGAGGAAGAAATCTCTGAATTGGATATCTTGTGGAGAGAAATGGAAGTTTCACTGGCATCGACTTATCTTGAAGACACAGAGGGTTCAAATGCTGCAGTTTTTGCTGAGACTTGGGAAAAATCCAATCAAATTTGTCAACATGATTATAGATTGAATGAAGAAATTGGAATTTACTGCCATAGATGTGGCTATGTCAGCATCGAGATAAAAGATGTTTCACCACTCTTTATGGAACGCTCATTATGGCACCAAGAGGAGAAGCAATGTAGTGGAGAAGGTTCAGAGCGGAAGGCTGATGAAGATGATGATTTCCGTCTTCTCTCAATTCAAAGTTGTCCTGATGAACCAATATCTGAAGAAAATGATAATGTCTGGGCATTAATTCCTGAACTTAGGAGGAAGTTGCATGTCCACCAAAAAAAGGCTTTTGAATTTCTTTGGCAAAATATTGCAGGGTCCATGGAACCAGCACTTATGGAAGCAACGCCCAAAAGAAGAGGCGGTTGTGTGATATCTCATTCTCCAGGAGCTGGAAAAACTTTACTTATAATTGCGTTTCTTGTTAGCTACTTGAAATTATTCCCAGGGAAGCGACCTCTGGTTCTTGCTCCTAAGACAACACTTTATACTTGGTATAAAGAATTTATTAAATGGGAAATTCCTCTTCCAGTGTATCTGATTCATGGTCGTAGAACCTACAGAGTATTCAAGCAGAAATCATATGTTTTTCCTGGAGCTCCAAAGCCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAGATACAAAAGTGGCATGCACACCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACACAGAAGGTATATGGCTAAGGTATTAAGGGAAAGTCCTGGTATCCTGATACTGGATGAAGGTCACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAAGTTTTGATGAAAGCAAATACAGAATTGAGGATATTACTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTTAATACTCTCTACTTGGCAAGACCAAAGTTTGCTCACGAAGTGCTGAAAGAATTAGACCCAAAATACAAGAGGAAAAAGAAAGGAGTAGAGAAGGCACGTCATTTAATTGAGGCACGAGCTAGAAAATTCTTCTTGGATAATATTGCGAAAAAAATTGACTCAACTATTGATGAGGAAAGAATGCAGGGTCTAAACATGTTGAGAAATATGACAAGTGGTTTTATAGATGTTTATGAAGGTGGGGGTTCTGACAGTCTTCCCGGTTTACAAATATATACATTATTAATGAATACTACTGATATACAACATGAGATTCTGCAGAAACTCCAGCGGAAAATGGGTGAGTGCAATGGATATCCATTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTAATCAAAACTGCTGTATGTGCTAATAAGTTTTTCTCGATGGAGCAATTGAAGGAGCTGGAGAAATGCAAGTTTGATTTAAAAAGAGGGTCAAAAGTAAGATTTGTTTTGAGTCTAGTCTATCGCGTTGTCAAGAAGGAGAAGATTCTGATTTTTTGCCACAATATTGCGCCTGTGAAATTATTTGTAGAATTGTTTGAGAAGTTCTTCGGATGGCAAAAGGGTCGAGAAGTTTTGATACTTACTGGGGAGCAAGAGCTCTTTGAACGAGGAAGGGTGATGGATAAGTTTGAGGATCCTGGTGGTGCATCGAAGATACTGCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCCTCTCGGGTGATTTTGTTGGACTCAGAATGGAATCCATCGAAAACAAAGCAGGCTATAGCGCGGGCCTTTCGTCCTGGTCAGCAAAGGATGGTTTATGTGTATCAACTGTTGGTAACAGGCACATTGGAGGAAGATAAGTATCGAAGAACCACTTGGAAAGAGTGGGTCTCAAGCATGATTTTTAGCGAAGCTTTTGTGCAGGATCCTTCCTGTTGGCAAGCTGAAAAGATTGAAGATGATATACTACGGGAAATGGTTGAGGAAGACCGGTCTAAATCATTCCATATGATAATGAAGAATGAAAAGGCATCAACAAACTGA	4023	0.3922	MENLAGLTEFSIWVFLQNRNGYGRFISLHLKITSDADHVIDRPVGVYKFIYFSATFEAFLSGSWQALEFITIEAGTMAFRSIDNNYKVMDKGPFSDIRIRSRKATLSDCSCFLRPGIDICVLIASQHADSSDENSLNPVWADAKISSIQRKPHESECSCQYYVNFYVNQGSLGTEVRTLSKEIKVVGINQISILQKLEHSPCEDQHYRWDSSEDCSAVPQTKLLLGKFLSDISWLVVTSVLKQVSFCVKSVGNKIVYHILGADNNSSPLNSGSHLTVINFKVDNGMLVPIVAQLVPSDTNKVDHALDSHEDEASPSYNHEGLRRSKRRNVQPDRYLGCDNISELDVGFVRTRPYKIDKWKDDDEDDELSLPLSCLFGLQENNLLEDVNSRERFNKRKSRQKLLVYERRTKSRELKSDDDDDQKEHQSQLAIVPFPDEVDPIAFEHYDLNAKVTKYYAHENVEISTKYYPLTSSPELKRNNIDLLTFEPYNHPAKIPDLENYAEEIDDISSRCYYSYGTPNLQRKNVLGLDDMDFKSRWEGINSGKGVQGRKNRSTYSRSRQLGQERTYKDRSLSAGAYNKLIDSYLKNMDTKPSEVEPPITDQWKQFKEASNFGQKRETEASQVEDEEEISELDILWREMEVSLASTYLEDTEGSNAAVFAETWEKSNQICQHDYRLNEEIGIYCHRCGYVSIEIKDVSPLFMERSLWHQEEKQCSGEGSERKADEDDDFRLLSIQSCPDEPISEENDNVWALIPELRRKLHVHQKKAFEFLWQNIAGSMEPALMEATPKRRGGCVISHSPGAGKTLLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPLPVYLIHGRRTYRVFKQKSYVFPGAPKPTDDVKHILDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFAHRRYMAKVLRESPGILILDEGHNPRSTKSRLRKVLMKANTELRILLSGTLFQNNFCEYFNTLYLARPKFAHEVLKELDPKYKRKKKGVEKARHLIEARARKFFLDNIAKKIDSTIDEERMQGLNMLRNMTSGFIDVYEGGGSDSLPGLQIYTLLMNTTDIQHEILQKLQRKMGECNGYPLELELLITLGSIHPWLIKTAVCANKFFSMEQLKELEKCKFDLKRGSKVRFVLSLVYRVVKKEKILIFCHNIAPVKLFVELFEKFFGWQKGREVLILTGEQELFERGRVMDKFEDPGGASKILLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQRMVYVYQLLVTGTLEEDKYRRTTWKEWVSSMIFSEAFVQDPSCWQAEKIEDDILREMVEEDRSKSFHMIMKNEKASTN	1340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g0788	1340	Gene3D	-	738	1027	IPR038718	-
	Glsi08g0788	1340	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1147	1307	IPR001650	-
	Glsi08g0788	1340	SMART	helicmild6	1171	1260	IPR001650	-
	Glsi08g0788	1340	MobiDBLite	consensus disorder prediction	307	328	-	-
	Glsi08g0788	1340	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	747	988	IPR027417	-
	Glsi08g0788	1340	Gene3D	-	1116	1335	IPR027417	-
	Glsi08g0788	1340	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	786	985	IPR014001	-
	Glsi08g0788	1340	Pfam	Helicase conserved C-terminal domain	1143	1259	IPR001650	-
	Glsi08g0788	1340	MobiDBLite	consensus disorder prediction	408	426	-	-
	Glsi08g0788	1340	SMART	ultradead3	757	1001	IPR014001	-
	Glsi08g0788	1340	MobiDBLite	consensus disorder prediction	543	568	-	-
	Glsi08g0788	1340	CDD	SF2_C_SNF	1135	1271	-	-
	Glsi08g0788	1340	CDD	DEXHc_ATRX-like	761	1000	-	-
	Glsi08g0788	1340	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1060	1321	IPR027417	-
	Glsi08g0788	1340	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	88	1339	IPR044567	GO:0080188
	Glsi08g0788	1340	MobiDBLite	consensus disorder prediction	547	562	-	-
	Glsi08g0788	1340	Pfam	SNF2-related domain	758	1025	IPR000330	GO:0005524\|GO:0140658
	Glsi08g0788	1340	MobiDBLite	consensus disorder prediction	408	428	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g0788	Glsi-ChrGlsi08	6026910	6035592	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g0788	1139	1278	RAD5 or RAD16-like Gene Family	AT5G43530	34.965	1.49e-11	67.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Glsi08g0788		SNF2_N	8e-17	CL0023