Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0782 ATGGGTGGGAATTCGCCATGCGCTTCGTGCAAGCTGCTGCGACGCCGATGCGCCAGAGATTGCATATTCGCTCCTTATTTCCCTTCTGATGACCCCCAAAAGTTTGCCATAGTTCACAAGGTCTTCGGCGCTAGCAACGTTAGCAAAATGTTGCAGGAACTTCCGGTTCAGCAAAGAGCAGATGCAGTGAGCAGCCTAGTTTACGAAGCAAATGCGAGAGCTCGGGACCCGGTTTATGGTTGTGTTGGAGCCATATCGTACCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAGGAGCCAGTGATGCCAAACCCCGAAATTGACCCAGATCAGAAATCTTACTATATCCAAAATGATCTCCCTCAGTACCTCAATTTCGCCTCTTCCAGCAATGTAATTCACGAGTCTCTCAAGAGAGAGACCATCTTTGGACACGACATGGTTTCTTGA 495 0.4869 MGGNSPCASCKLLRRRCARDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVQQRADAVSSLVYEANARARDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEIDPDQKSYYIQNDLPQYLNFASSSNVIHESLKRETIFGHDMVS 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0782 164 Coils Coil 85 105 - -
Glsi08g0782 164 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Glsi08g0782 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 119 - -
Glsi08g0782 164 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0782 Glsi-ChrGlsi08 5979250 5980002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0782 3 131 AS2 family AT2G30130 80.451 7.58e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi08g0782 LOB 1.1e-42 No_clan