Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi08g0779 | ATGGTTCGTATGCTCCCTAGAGGATTGAAGAAGCATTTGAAAAGGCTCAATGCTCCAAAGCATTGGATGCTTGCCAAATTGGGCGGTGCATTTGCTCCTAAGCCCTCATCTGGTCCCCACAAATCCAGGGAATGCTTCCCACCCATTCTTATATTGCGAAATCACTTTAAATATGCATTGACATACCGTGAAGTCGTTGCTATTCTGATGCAACGACATGTACAGATTGATGGGAAAGTCAGGACAGACAAGACATATCCATCTGGTTTCATGGATGTTGTATCAATTCCAAAAACAAATGAGAACTTCCGTCTCCTGTATGACACTAAAGGCCGATTCCATCTTCACTCAATCAGGGATGAGGAGGCTAAGTTTAAGCTCTGCAAGGTCCGGTCAGTGCAGTTGGGGCAGAAGAGCATCCCATGCCTGAACACCTATGATGGCCGCACTATTCGCTACCCAGATCCTCTCATCAGGGCTAATGACACTATTAAGCTGGATTTGGAGAACAACAAAATTGTTGATTTCGTCAAATTTGATGTCGGAAATGTAGTTATGGTTACGAAGGGAAGGAACAAAGGACGTGTTGGAGTGATCAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGCTAATCCACGTGCAGGATGCAACTGGGCATGAATTTGCAACCCGGATGGGCAATGTGTTCATTATTGGCAAGGGGACAAAACCTTGGGTGTCACTTCCCAAGGGCAAGGGTGTTAAGCTATCAATCATTGAGGAGGCCAGGAGAAGGATTGCCACCCAACAAGCAGCCACTGCATAA | 807 | 0.4597 | MVRMLPRGLKKHLKRLNAPKHWMLAKLGGAFAPKPSSGPHKSRECFPPILILRNHFKYALTYREVVAILMQRHVQIDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFHLHSIRDEEAKFKLCKVRSVQLGQKSIPCLNTYDGRTIRYPDPLIRANDTIKLDLENNKIVDFVKFDVGNVVMVTKGRNKGRVGVIKNREKHKGSFELIHVQDATGHEFATRMGNVFIIGKGTKPWVSLPKGKGVKLSIIEEARRRIATQQAATA | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi08g0779 | 268 | ProSitePatterns | Ribosomal protein S4e signature. | 12 | 26 | IPR018199 | - | |
| Glsi08g0779 | 268 | FunFam | 40S ribosomal protein S4 | 5 | 121 | - | - | |
| Glsi08g0779 | 268 | FunFam | 40S ribosomal protein S4 | 179 | 249 | - | - | |
| Glsi08g0779 | 268 | PIRSF | RPS4a_RPS4e | 5 | 245 | IPR000876 | GO:0003735|GO:0005840|GO:0006412 | |
| Glsi08g0779 | 268 | Gene3D | - | 126 | 176 | IPR038237 | - | |
| Glsi08g0779 | 268 | FunFam | 40S ribosomal protein S4 | 126 | 176 | - | - | |
| Glsi08g0779 | 268 | CDD | S4 | 57 | 110 | - | - | |
| Glsi08g0779 | 268 | Hamap | 30S ribosomal protein S4e [rps4e]. | 11 | 242 | IPR000876 | GO:0003735|GO:0005840|GO:0006412 | |
| Glsi08g0779 | 268 | Pfam | Ribosomal family S4e | 99 | 173 | IPR013845 | - | |
| Glsi08g0779 | 268 | Pfam | RS4NT (NUC023) domain | 7 | 43 | IPR013843 | - | |
| Glsi08g0779 | 268 | SMART | kow_9 | 178 | 205 | IPR005824 | - | |
| Glsi08g0779 | 268 | Pfam | 40S ribosomal protein S4 C-terminus | 216 | 262 | IPR032277 | - | |
| Glsi08g0779 | 268 | Pfam | KOW motif | 181 | 214 | IPR005824 | - | |
| Glsi08g0779 | 268 | Gene3D | - | 5 | 121 | IPR036986 | GO:0003723 | |
| Glsi08g0779 | 268 | CDD | KOW_RPS4 | 179 | 233 | IPR041982 | - | |
| Glsi08g0779 | 268 | Gene3D | - | 179 | 249 | IPR014722 | - | |
| Glsi08g0779 | 268 | PANTHER | 30S/40S RIBOSOMAL PROTEIN S4 | 4 | 257 | IPR000876 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi08g0779 | Glsi-ChrGlsi08 | 5966820 | 5969151 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi08g0779 | 5 | 266 | Cytoplasmic Ribosomal Protein Gene Family | AT5G58420 | 85.496 | 6.48e-176 | 483 |