Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0777 ATGGGCGATACCTCTGTCAGTATGAATTTTGGAAAAGAAAATACTAGTAACAATCTACAAAGAACAAATGCGCCCCGCCAGACGGCAGTGTTAGGTGCTCCTCCACCACTTCTATTCGAAGTTATAAACCTTCACGTCGATTGGGTTCTGCCTACCAGAGAATCCAAGCTCCTCTTGCTCTCACTCAAAGTTTCACAGAAAACCCTAGGGCACCAACGTACCAAACCCATGTCTCCCAACCTCGAATGTCGCATGTACGAGGCCAAGTACCCGGAGGTCGACATAGCCGTCATGATACAGGTCAAGAACATTGCCGACATGGGCGCGTACGTCTCACTGCTCGAGTATAACAACATCGAGGGTATGATCTTGTTCTCAGAGCTCTCTCGCCGTCGGATTCGTAGTATTAGCAGCCTCATCAAGGTGGGTCGCATCGAGCCTGTCATGGTCCTCAGGGTCGACAAGGAAAAGGGCTACATCGATTTGAGCAAGAGAAGGGTTTCTGAAGAGGATATTGAGGCTTGTGAGGAGAGGTACAACAAGAGCAAGCTTGTTCACTCCATTATGCGCCACGTTGCTGAGACTATGAATACCGATTTAGAGGAGCTGTATGTTCACATTGGATGGCCTTTATATCGCAAATATGGTCATGCTTTTGAGGCGTTCAAAATAATTGTGACTGATCCTGATTCAGTTTTGGATTCCCTCACCCGTGAATTCAAGGACCCTGATGGGCAGGAGGTGACCAAGGTGGTTCCAGCAGTGTCAGAAGAAATGAAGGAAGCCCTAGTAAAGAATATTAGAAGAAGAATGACACCCCAACCCTTGAAAATAAGGGCAGATATTGAAATGAAATGTTTTCAGTTTGACGGAGTTCTTCACATTAAGGAGGCTATGCGGAGAGCTGAAGCTGCTGGAAATAATGATTGCCCTGTAAAAATCAAACTTGTTGCTCCCCCGCTTTATGTTCTTACCACTCAGACTCTTGACAAGGAACAAGGAATATTGGTTCTCAACAATGCTATTGTTGCTTGCACTGAAGCAATAGAGAAACACAAGGGTAAACTTGTTGTCAAGGAGGCAGCGAGAGCGGTGAGTGAGCGTGATGACAAGTTGCTTGCTGAACACATGGCCAAGCTACGCCAAGATAATGAGGAGATTAGTGGCGATGAAGATAGTGAGGAGGAAGAAGATACAGGAATGGGAGAGGTTGACGTGGAGAACCAGAATTCTGGGGTGACAGAGTGA 1248 0.4647 MGDTSVSMNFGKENTSNNLQRTNAPRQTAVLGAPPPLLFEVINLHVDWVLPTRESKLLLLSLKVSQKTLGHQRTKPMSPNLECRMYEAKYPEVDIAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSISSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIEACEERYNKSKLVHSIMRHVAETMNTDLEELYVHIGWPLYRKYGHAFEAFKIIVTDPDSVLDSLTREFKDPDGQEVTKVVPAVSEEMKEALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRRAEAAGNNDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIVACTEAIEKHKGKLVVKEAARAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENQNSGVTE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0777 415 Gene3D EIF_2_alpha 276 398 IPR024055 -
Glsi08g0777 415 Pfam Eukaryotic translation initiation factor 2 alpha subunit 203 331 IPR011488 GO:0003723|GO:0003743
Glsi08g0777 415 SUPERFAMILY Nucleic acid-binding proteins 88 170 IPR012340 -
Glsi08g0777 415 MobiDBLite consensus disorder prediction 387 403 - -
Glsi08g0777 415 MobiDBLite consensus disorder prediction 376 415 - -
Glsi08g0777 415 Pfam S1 RNA binding domain 100 165 IPR003029 GO:0003676
Glsi08g0777 415 FunFam Eukaryotic translation initiation factor 2 subunit alpha 80 167 - -
Glsi08g0777 415 CDD S1_IF2_alpha 91 166 IPR044126 GO:0003723
Glsi08g0777 415 Gene3D - 79 167 IPR012340 -
Glsi08g0777 415 MobiDBLite consensus disorder prediction 1 24 - -
Glsi08g0777 415 SMART S1_6 92 165 IPR022967 -
Glsi08g0777 415 FunFam Eukaryotic translation initiation factor 2 subunit alpha 168 270 - -
Glsi08g0777 415 FunFam Eukaryotic translation initiation factor 2 subunit 1 276 398 - -
Glsi08g0777 415 Gene3D Translation initiation factor 2; subunit 1; domain 2 168 270 IPR024054 -
Glsi08g0777 415 Coils Coil 377 397 - -
Glsi08g0777 415 SUPERFAMILY eIF2alpha middle domain-like 167 270 IPR024054 -
Glsi08g0777 415 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 77 404 IPR011488 GO:0003723|GO:0003743
Glsi08g0777 415 SUPERFAMILY eIF-2-alpha, C-terminal domain 274 390 IPR024055 -
Glsi08g0777 415 ProSiteProfiles S1 domain profile. 94 165 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0777 Glsi-ChrGlsi08 5949285 5955821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0777 78 415 Eukaryotic Initiation Factors Gene Family AT5G05470 80.645 0.0 523