Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0773 ATGATCAAGAATTGCAACGTGAGAGTTTTGCTCTTTGCAGTGGTATTGTTGTTGTTTCAGAGCTTCCGTTTGTGCTGGTCTTTAAATGACGAAGGTAAGGCGCTTTTGAAGTTGAGAAAGGGAATCGTGAGGGACCCTTTTGGTGCTTTGTCAAATTGGATTGATGATGAAGGAGAGGCTGACCCGTGTAATTGGTTCGGAGTTGAGTGCTCAGATGGAGCAGTGGTGGTCTTGAATTTGAAAGATCTTTGTCTTGGAGGAACTCTGGCACCTGAGCTTGCAAACCTTATTCACATAAAGTCCATTATTTTGCGGAACAATTCTTTATCAGGTGTCATCCCTGAAGAATTTACAGATTTGAAAGAGTTGGAGATTTTGGATTTGGGATACAACAACTTTGGTGGACCTCTACCACCGGATCTTGGGAGTAGCATCTCACTAGCGATCCTTTTACTGGACAACAATGAACTTCTTGGTGGCTTCTCTCCTGAAATTAATGAACTCAAGATGCTTTCTGAATATCAAGTAGATGAAAACCAGCTAACTGGTGCAGCTAAAAGGCCATCTTGCGGAAGAAGATACATTAAATGGAATGTTGGCCAATATGAAGCTAGTCCTCGGAGGCTACTGCAAGCTTCTATACCGGAGCTTCACGATCCGCATAACCGTGAAGCTAATCCACCTCCTGACATCCCTGCTCCTCCCCCTTTTCCAGACCCTCCTTCACTTTCCTCATCTGCACCGGCAATATCACCACTAGTGCCAAAGCCAGCTCTTCCTCTACTGTCTACACCAGGCTCTGGAATCCAATCTAAAAGTACCTCCTCAAAGGATCAACAAACTGCAATGTTGGCTGGAGTTATAGGTGGCGTTGCGTTTCTTCTTATTTCAGTCATTGTCATATATCTTTGTAAAACCAATAAGGTAGCTACTGTCAGACCTTGGGCCACGGGAATAAGCGGACAGCTTCAAAAGGCATTTGTGACCGGCGTGCCAAAGCTAAAGAGATCAGATCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTACTTCATCCATTGGTACAGTGTACAAAGGGACTTTATCTAGTGGAGTTGAAATAGCTGTAGCGTCTGCTACAGTAACATCAGCCAAGGATTGGTCAAGGACTTCAGAAGTGCAGTTTAGGAAGATGATAGATAAATTATCAAAAGTAAATCACAAGAATTTTGTCAATCTTCTTGGATACTGTAAAGAAGAGCAGCCTTTCACCAGAATGGTGGTTTTTGAATATGCCCCTAATGGGACACTCTTTGAGCACTTACATATAAAACAAGCTGAGCACTTGGATTGGGGAACAAGACTTAGAATAGCAATGGGCATGGCTTACTGCCTGCAACATATGCACCAGTTGAAGCCTCCTATAGCCCATAGTAATCTGAACTCTTCAGCTGTCTATCTCACAGATGACTACGCTGCCAAAATCTCGGATTTGAGTTTCTTGAGTGAAATAGATTCAGCTGAGAGAAAAGATGGGGGCAGGAAACACAATGATGTGCCATCAGCAAGTCCAGAAAGTAACATTTATAGCTTTGGTGTAATGCTATTTGAAATGGTAACAGGCCGGCTTCCTTATTCAGCAGATAATGGCTCACTTGATGACTGGGCATCAAAATATTTACGTGGGGATAGGCCCCTCAAAGAAATAGTGGATCCAACTCTAGCATCTTTCCAAGAAGAGCAACTAGAAGTTGTTGCTGAAATAATGAGATCTTGTGTCCATCCCGACACACAGCAGAGACCAACAATGAAAGACGTGAGTGTGAGATTGAGAGATATAACAAAAATAACACCTGATGCAGCAGTTCCTAAACTTTCTTCACTTTGGTGGGCAGAGCTTGAGATTTGTTCTGCAGATGCTAGCTGA 1911 0.4291 MIKNCNVRVLLFAVVLLLFQSFRLCWSLNDEGKALLKLRKGIVRDPFGALSNWIDDEGEADPCNWFGVECSDGAVVVLNLKDLCLGGTLAPELANLIHIKSIILRNNSLSGVIPEEFTDLKELEILDLGYNNFGGPLPPDLGSSISLAILLLDNNELLGGFSPEINELKMLSEYQVDENQLTGAAKRPSCGRRYIKWNVGQYEASPRRLLQASIPELHDPHNREANPPPDIPAPPPFPDPPSLSSSAPAISPLVPKPALPLLSTPGSGIQSKSTSSKDQQTAMLAGVIGGVAFLLISVIVIYLCKTNKVATVRPWATGISGQLQKAFVTGVPKLKRSDLEAACEDFSNVIGTSSIGTVYKGTLSSGVEIAVASATVTSAKDWSRTSEVQFRKMIDKLSKVNHKNFVNLLGYCKEEQPFTRMVVFEYAPNGTLFEHLHIKQAEHLDWGTRLRIAMGMAYCLQHMHQLKPPIAHSNLNSSAVYLTDDYAAKISDLSFLSEIDSAERKDGGRKHNDVPSASPESNIYSFGVMLFEMVTGRLPYSADNGSLDDWASKYLRGDRPLKEIVDPTLASFQEEQLEVVAEIMRSCVHPDTQQRPTMKDVSVRLRDITKITPDAAVPKLSSLWWAELEICSADAS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0773 636 MobiDBLite consensus disorder prediction 218 249 - -
Glsi08g0773 636 ProSiteProfiles Protein kinase domain profile. 344 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0773 636 MobiDBLite consensus disorder prediction 226 245 - -
Glsi08g0773 636 FunFam Nuclear pore complex protein NUP107 28 187 - -
Glsi08g0773 636 FunFam Inactive receptor-like serine/threonine-protein kinase 318 426 - -
Glsi08g0773 636 Pfam Protein tyrosine and serine/threonine kinase 346 603 IPR001245 GO:0004672|GO:0006468
Glsi08g0773 636 Gene3D Transferase(Phosphotransferase) domain 1 427 616 - -
Glsi08g0773 636 SUPERFAMILY Protein kinase-like (PK-like) 327 603 IPR011009 -
Glsi08g0773 636 Gene3D Ribonuclease Inhibitor 27 199 IPR032675 -
Glsi08g0773 636 PANTHER PROTEIN MALE DISCOVERER 2 8 633 - -
Glsi08g0773 636 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Glsi08g0773 636 Gene3D Phosphorylase Kinase; domain 1 317 426 - -
Glsi08g0773 636 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Glsi08g0773 636 SUPERFAMILY L domain-like 34 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0773 Glsi-ChrGlsi08 5923551 5927112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0773 11 556 Receptor kinase-like Gene Family AT2G23950 27.491 1.93e-48 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Glsi08g0773 PK_Tyr_Ser-Thr 6.7e-27 CL0016