Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0769 ATGGACGAAACTCTATCTGCGATGATGATCTTCTCAGGCTTTTTACCAACTGGGTCTTTGCTAGATTCCTTGATTCACATATCTAATGAAGTTGCCTCCATGGAAAAGTTCCCTTTTGTGCAAGTTAGGAATGTTTCGTCCATGATTAGGAGGATGAAGCTTCTTTCTTCTTTGTTCGAGGAGATTCAAGAAAGAGATAGTCCACTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCTGTGATTAGAAGAGTGAAGCTTTTGATCCAAGAGTGCAAGGATGGAAGCTCTCTTTGGAGTCTTATGAAGTTAGAGTTCATTTCCAACCAATTCTATGTGCTGGTGAAGGAGATGGGAAGAGCCCTTGACATCCTTCCCCTGAGCTTGCTCAATATAGCAGATATACGAGAGCAAGTGGAGCTTCTGCACAAACAGGCAAAGGGAGTTGAGTTGTTCATGGATCCTCGAGAGATTCAACGAAGAGAACATCTTCTACAAGTTATGGCCAACAACAATATGCAAAACAAGAAGAACAAGGGCTTTCTTGATTTTGAGAAAGTGCAAGAAATATTAAGCGGCATTGGTCTGAGAACTCCATCAGATTATGATAGAGAAATATCAAAGCTAGAGGCTGAGGCTCAGAATCAGGCAGGCACAGGAGGACTAATCGTTGTCTCCAATATAAACAATCTCATATCTCTGGTAACGTATTCCAAAGCCATGATTTTCAGATATGGAGAAAATGAAATAGAAGAAGAAGGCTGTAAGCCACTGTCTGCATTGATAAATAAAAACTGTGATAGTACTTCATCTTCTCAGTCCACAGCACCCTATGTTCCTGATGAATTTCGTTGTCCAATTTCACTTGACTTAATGAGAGACCCAGTGATTGTATCATCTGGGCATACTTATGATCGAATTTCAATTGCACAATGGATAAACTCTGGGCATCACACTTGCCCCAAAAGTGGGCAAAGGTTAATCCACACTGCTCTAATACCCAACTATGCTTTGAAGAGTCTTGTCCAACAATGGTGCTATGAGCACAATGTCCCAGTGAATGAGCCTACATCTTCAGTTTCCTCAATTTCTGAGGAAATCAAGAGTAAGGATAACTCGAATGATAAAGCTATCGATCATATTTCTGCAAGCAAAGCAGCTATAGATGCTGTCAAAATGACAGCAGAATTTCTAGTCGGAAAATTGGCAACTGGGTCAGCTGATATCCAAAGGCAGGCTGCTTATGAGCTTCGGTTACTAGCAAAAACTGGAATGGGTAATCGAAGAATCATTGCTGAGGCAGGGGCAATTCCGTTTCTAGTGACATTACTGGTTTCGCATGATCCAAGAATCCAGGAACATGCAGTTACAGCTTTGTTTAACCTCTCCATCTTCGACAACAACAAGATTCTGATCATGGCAGCTGGAGCAGTAGACAATATAGTAGAAGTGCTTGAATCGGGGAGAACCATGGAGGCTAGAGAAAATGCAGCGGCAGCAATATATAGCTTGTCTATGGTTGACGATTGTAAGGTAGAAATTGGAGGTCGTCCAAGGGCCATACCTGCCTTAGTTGGACTCTTGAGAGAAGGAACTCCTATTGGGAAAAGAGATGCTGCTACTGCACTTTTCAATCTTGCAGTTTACAATCCAAACAAGGCGAGAATCGTTTATGCTGGGGCAGTTCCTTCGCTTATTGAGTTGCTGATGGATGATAAGGCTGGCATAACAGATGATTCCCTGGCTGTGCTTGCTTTCCTTCTGGGTTGCTCTGAAGGGCTGGAAGAGATAAGGAATAGTAGAGTATTGGTGCCTCTTCTTATTGATCTTTTAAGGTTTGGGTCAGCCAAAGGGAAGGAAAATTCGATAACGCTTTTACTAGGATTGTGTAAAGAAGAAGGTGAGGTAGTGGCAAGGCGTCTATTGGCAAATCCACGAAGCATTCCTTCTCTTCAAAGCTTGGTTGCCGATGGTTCTTTGAGAGCTAGAAGAAAGGCCGACGCGCTGCTTAGACTGCTCAATAGGTGCTGCTCTCAACCCCATCATGCGCTTTAA 2061 0.4275 MDETLSAMMIFSGFLPTGSLLDSLIHISNEVASMEKFPFVQVRNVSSMIRRMKLLSSLFEEIQERDSPLPPSSILCFTELFSVIRRVKLLIQECKDGSSLWSLMKLEFISNQFYVLVKEMGRALDILPLSLLNIADIREQVELLHKQAKGVELFMDPREIQRREHLLQVMANNNMQNKKNKGFLDFEKVQEILSGIGLRTPSDYDREISKLEAEAQNQAGTGGLIVVSNINNLISLVTYSKAMIFRYGENEIEEEGCKPLSALINKNCDSTSSSQSTAPYVPDEFRCPISLDLMRDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYEHNVPVNEPTSSVSSISEEIKSKDNSNDKAIDHISASKAAIDAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMGNRRIIAEAGAIPFLVTLLVSHDPRIQEHAVTALFNLSIFDNNKILIMAAGAVDNIVEVLESGRTMEARENAAAAIYSLSMVDDCKVEIGGRPRAIPALVGLLREGTPIGKRDAATALFNLAVYNPNKARIVYAGAVPSLIELLMDDKAGITDDSLAVLAFLLGCSEGLEEIRNSRVLVPLLIDLLRFGSAKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLVADGSLRARRKADALLRLLNRCCSQPHHAL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0769 686 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Glsi08g0769 686 PANTHER U BOX DOMAIN-CONTAINING 44 680 - -
Glsi08g0769 686 SUPERFAMILY ARM repeat 397 675 IPR016024 -
Glsi08g0769 686 SMART arm_5 592 633 IPR000225 GO:0005515
Glsi08g0769 686 SMART arm_5 426 466 IPR000225 GO:0005515
Glsi08g0769 686 SMART arm_5 467 508 IPR000225 GO:0005515
Glsi08g0769 686 SMART arm_5 510 550 IPR000225 GO:0005515
Glsi08g0769 686 SMART arm_5 551 591 IPR000225 GO:0005515
Glsi08g0769 686 Gene3D - 365 517 IPR011989 -
Glsi08g0769 686 Pfam Armadillo/beta-catenin-like repeat 429 465 IPR000225 GO:0005515
Glsi08g0769 686 Gene3D - 518 678 IPR011989 -
Glsi08g0769 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Glsi08g0769 686 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Glsi08g0769 686 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Glsi08g0769 686 CDD RING-Ubox_PUB 282 334 IPR045210 -
Glsi08g0769 686 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Glsi08g0769 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Glsi08g0769 686 FunFam RING-type E3 ubiquitin transferase 492 679 - -
Glsi08g0769 686 SUPERFAMILY RING/U-box 273 355 - -
Glsi08g0769 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0769 Glsi-ChrGlsi08 5899336 5901396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0769 18 681 U-box Gene Family AT3G46510 36.960 5.52e-124 381