Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0756 ATGGTGGGCTGGGGTAAACATTTATTGCTCAATTTGCTTTGTTTAATACAACCGGCTCCTTTTAGCTCAAAGGTCCTGGGCATGTGCGGTAGTTCAAGAAGTAGACTTTCTCCCTCAAACTACGCCATGGAAAGTGAGTTTCAGAAGCAGAACCGTGATGATCTCTCTGACTTTTCAGTTTTGCTTGAACTGTCTGCATCGGATGATCTTGAAGCTTTCAGAAGCATAGTAGAAGCGAAGGGTTTTGATGTCAACTTGGCGAGCTTTTGGTATGGTAGAAGAATTGGATCAAAGAAGATGGGGTTAGAAAAGAGGACGCCCCTCATGATTGCTTCTTTGTTTGGGAGCACTAGAGTGCTGAAGTATATTATAGAGACAGGTAGGGTTGATGTGAACAGGACTTGTGGTTCTGATAAGGCCACTGCTCTCCATTGTGCTGTTGCTGGTGGCTCTGAATCTTCATTTGAGACTGTTAAGCTCTTGCTTGATACTCGGGCCGATGCTGATTGTCTTGATGCTTGTGGAAATAAGCCTGTTAACCTGATTGCCCCTGCCTTTAATTCTTTGTCCAATACCCGAAGAAAGGCCATGGAGTTTATGCTCAGAGGTGGAGAAGGAGATCAGATCATCGACCAAGAGCTGGAGCTACAGAAAATATCAGCGCCTTCTTTCTCTTCGAAAGAAGGAATTGAGAAAGGAACAGAGAAGAAAGAATATCCCGTTGATATATCATTGCCTGACATAAACAATGGTATATATGGAACAGACGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCTTACTCCCATGATTGGACCGAGTGTCCATTTGTTCATCCAGGGGAGAACGCAAGGAGGAGAGACCCAAGAAAGTACCCTTACAGCTGTGTTCCCTGCCCAGAGTTTCGCAAAGGGTCCTGCCAGAAGGGTGACGCCTGTGAATATGCACATGGCGTTTTTGAGTCCTGGCTCCATCCTGCCCAATATCGAACAAGGCTTTGCAAGGATGAGACTGGATGCACTAGGAAAGTCTGCTTCTTTGCTCACAAGCCTGAGGAGTTACGCCCGGTCTACGCTTCCACTGGGTCAGCTATGCCTTCACCAAAATCTTTTTCAACTAGTGCACTTGACATGACGTCAATGAGTCCATTGGCTCTTGGTTCCTCATCTTTGCCGATGCCAACTGTTTCAACACCGCCCATGTCTCCCTTGGCAGCTTCTTCATCTCCTAAAAGCGGAAGCCTGTGGCAGAACAAAATAAACCTCACGCCACCATCCTTGCAGCTCCCTGGGAGCCGGCTGAAGGCTGCTTTGAGTGCTAGGGATCTGGATCTGGAAATGGAACTGCTTGGACTAGAAAGTCCTGCTAACCAACAGCAGCAGCAACTGATAGAAGAATTGGCTCGAATCTCTTCCCCATCTCTCCGAAACAAAGAATTCAATAGGCTCGGTGATTTGAAACCAACAAACCTTGATGACCTTCTAGGATCTGTTGATCATTCTGTACTATCTCAATTGCATGGACTTTCGGTACAACCCTCGTCACCTAGTCAATTGCACTCTCCAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCAAGCTATCCAACCAACCTTCCTTCCTGTACTGTGAGAAAGCCCTCAGCATTTGGATTTGACTCATCAGCTGCTGTAGCAGCGGCAGTGATGAATTCCAGGTCTGCTGCCTTCACAAAGCGAAGCCAAAGTTTTATTGACCGTGGAGCAGTGACCCACCATCTTGGACTGTCTTCAGCTTCCAACCCCACCAGTAGGATGTCCTCTGCCCTTGCAGATTGGAGTTCTCCCGATGGGAAATTGAATTGGGGCATGGATGGAGACGAGCTACACAAACTGAAGAAATCTGCTTCATTTGGGTTCCGAAATAATGCGGTGACTTCCCCCTCCCTGACACCAGAAAACGTGGAACCAGATGTCTCATGGGTTCATTCGTTGGTTAAAGACGTACCCGCCTCCGATAGGTCTGAGATATTTCGCGCTGAGAAGAAGCAGCAGTATGATCTCAGCAAAGAGATGCTTCCACCATGGGTGGAGCAAATGTATATAGAACAGGAGCAGATGGTGGCATAA 2130 0.4728 MVGWGKHLLLNLLCLIQPAPFSSKVLGMCGSSRSRLSPSNYAMESEFQKQNRDDLSDFSVLLELSASDDLEAFRSIVEAKGFDVNLASFWYGRRIGSKKMGLEKRTPLMIASLFGSTRVLKYIIETGRVDVNRTCGSDKATALHCAVAGGSESSFETVKLLLDTRADADCLDACGNKPVNLIAPAFNSLSNTRRKAMEFMLRGGEGDQIIDQELELQKISAPSFSSKEGIEKGTEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDACEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSFSTSALDMTSMSPLALGSSSLPMPTVSTPPMSPLAASSSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLGLESPANQQQQQLIEELARISSPSLRNKEFNRLGDLKPTNLDDLLGSVDHSVLSQLHGLSVQPSSPSQLHSPSGLQMRQNMNHLRASYPTNLPSCTVRKPSAFGFDSSAAVAAAVMNSRSAAFTKRSQSFIDRGAVTHHLGLSSASNPTSRMSSALADWSSPDGKLNWGMDGDELHKLKKSASFGFRNNAVTSPSLTPENVEPDVSWVHSLVKDVPASDRSEIFRAEKKQQYDLSKEMLPPWVEQMYIEQEQMVA 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0756 709 PANTHER UNKEMPT FAMILY MEMBER 63 669 IPR045234 -
Glsi08g0756 709 SUPERFAMILY Ankyrin repeat 54 180 IPR036770 -
Glsi08g0756 709 Gene3D - 35 230 IPR036770 -
Glsi08g0756 709 ProSiteProfiles Ankyrin repeat profile. 138 173 IPR002110 GO:0005515
Glsi08g0756 709 ProSiteProfiles Zinc finger C3H1-type profile. 297 324 IPR000571 GO:0046872
Glsi08g0756 709 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Glsi08g0756 709 SMART ANK_2a 56 86 IPR002110 GO:0005515
Glsi08g0756 709 SMART ANK_2a 138 170 IPR002110 GO:0005515
Glsi08g0756 709 SMART ANK_2a 103 133 IPR002110 GO:0005515
Glsi08g0756 709 Pfam Ankyrin repeats (3 copies) 70 169 IPR002110 GO:0005515
Glsi08g0756 709 Gene3D - 298 360 - -
Glsi08g0756 709 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Glsi08g0756 709 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Glsi08g0756 709 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0756 Glsi-ChrGlsi08 5800574 5804998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0756 58 668 C2H2 Transcription Factor Family AT5G12850 42.337 1.56e-137 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi08g0756 Ank_2 1.1e-07 CL0465