Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0749 ATGCTGATTGAAAGATGCTTTAAGATTTCTATTCCTGATGAACGGGGAGCTGGCTTTGTGTTGTTAGGCTTGTCAATATATAAACTTCTTAACCAGAATTTGGAAAGCAATGCTTCAATTCATTACCATATGAGAATTTTTAACCACCGCCGCTTCTCGGACTCCGACACCGACTCTGATAACAGTCAGTCTTGTTCGGAGCCCCTCCGCCACACGGACGTCTCCGAATCCATATTCAAATCTTATTTCGAATTCATCGGCCAATCATCGGCAACCACTTCTGACCTCTCAAAGATCCAATCCTTCCTCACCTCGTCCTCCTCCGGCGCTTTGTCATGCTTGATATGCCTCGAACGCATTAGACCCTCCGACCCCACCTGGTCCTGCACCTCCCTATGCTTCGCTGTCTTCCATCTTTTTTGCATACAGAGCTGGGCGCGCCAGGCATCCGACCTCGCTGCTGCGCGCGCTGCAACGCGCCTCCCTATTACAGCTGACAAGGCTGCCGAGTCTGCCTCATGGAACTGCCCCAAATGCAGGATTGAATACTTCAAAACACAGATCCCCAAATCCTATGTGTGTTTCTGTGGAAAATTGGAAAACCCTCCTAGCGATGATCCCTGGGTATTGCCTCATTCATGTGGTGAGATTTGTGGTAGGCCATTGAAGCACAATTGCGGCCACCATTGCCTGTTACTATGCCATCCAGGGCCGTGTCCATCGTGCCCGAAGCTCGTCAAAGTTCGATGCTTTTGTGGGTCACTCGAAGACGTTCGCCGATGCGGGTATAAGGAGTTTTCTTGTAACAATCCTTGTTCAAGGCTCTTGGACTGTGGTGCTCATAGGTGTTCTGAGATCTGTCACGTTGGGCCGTGTCCACCTTGCCGAGCCCGGGGAGTTTTTAGGTGCCAATGCGGGCAGAAAAAGGAGGAGAGAGAGTGTTGCGATCGCATTTTTCAATGTGATAATCCATGTGAGAAGGTGCTTAGTTGCGGTAAGCATGTTTGCAAGAAGGGGTGTCATTCGGGTGGATGTGGCGAGTGCCCTCTCCAGGGGAAGAGAACGTGTCCGTGCGGGAAGAGGATTTATGAAGGAATGCCTTGTGATGCTGCAGTACAATTGTGTGGGGCTACCTGCGATAAAAGATTGAGTTGCGGATATCACAGGTGCCCTGAGCGATGCCACCGTGGACAATGCGTAGAGACTTGCAGAGTTGTTGTAAGAAAATCCTGCCGTTGTGGGAGCCTGAAGAAAGATGTTCCTTGCTATCAAGATTTGGCATGTGAAAGGAAGTGTCAGGGGATACGCGACTGTGGGCGGCATGCATGTAAACGTCGCTGCTGTGATGGTGACTGCCCTCCGTGCTCAGAGATATGTGGCAGGAAGCTTCGATGTAAGAACCATAAATGTCCTTCTCCATGCCACAGAGGTGCTTGTGCCCCTTGTCCAATAATGGTGACAATATCATGTGCATGTGGTGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCTAAATGTCCTAAACTATGCCGTATCACTCCTTTATGCAGGCATGCATCAATCTGCAAGCCTCACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGGCTTCCTTGTGAAGAAGAGTACCCATGTGGACACACGTGCAAATTAAGGTGTCATGGTTCGAAACCTCCTCCTAATCCAGAGTTTACACTGAAACCAAAGAAAAAGAAGACAATAAAACAGAGTGAATGTGTTCCTGGCACTCCTTGCCCTCGTTGCCCAGAACTTGTGTGGAGATCATGTGTTGGCCAACACATTGGAGCAGAGAGAATGATGGTCTGCTCTGATAAATCACAGTTCTACTGTGAAAATTTGTGTGGAAATCCTCTCCCATGTGGTAATCATTATTGTACTAAAACTTGTCATGCCTTGGAGAGACAGTCTTCCTTGAACCAGCTACAGAGAAGTGAACCTTGTGAAGATTGTTGTCTTCCATGCCAAAAGGTAAGAGAGCCTACCTGTCCACATCACTGCCCTCAGCCTTGCCATCCTGGAGAATGCTCTCCATGCAAAGTGCTCATAAAACGATCATGTCATTGTGGCTCGATGGTCCATGTTTTTGAGTGCATATATTATAACAGCCTGTCTGTCAAGAATCAAGAGACTATTCGTTCATGTGGTGGGCCTTGCCACAGAAAGTTGCCATATTGTACACATCTATGCCCAGTGACATGTCATCCTGGTCAATGTCCATATCCTGAGAAATGCTCTAAAAAGGTCAATGTTCGTTGCAAATGCCAAACATTAAAAAAAGAATGGATATGTCAAGATGTTCAATCTGCCTATCATCGTGCGGGTACCCATCCCAGAGATGTACCAAAAAATCAATTTGGAATTGGACTTATTCCATGCAATTCTGATTGCAAGAGTAAAGTGCAGCTTGTTGAGTCAGAACTACAATTACGTAAATCAAGAGTTATGGAGGAAAAAGTGCCTGATACTGAAAAGTCATTACCAAAACGACGTAAAAGGCGAGAACGGATACAAGAATCCAACCGAACAACAAAACTTCAGAAAATTGTTTCCACCACGAAGCAGTTTCTTCTATCTGTCTTTCTTTTCGTGGCTCTTCTTGCTGCTATATATTATGGTTACAAGGGTCTTTTATGGCTGTCTGATTGGATGAATGAAGTTGACGAGCGAAGACACAGAAGATATACTCCAATCTCATAA 2736 0.4653 MLIERCFKISIPDERGAGFVLLGLSIYKLLNQNLESNASIHYHMRIFNHRRFSDSDTDSDNSQSCSEPLRHTDVSESIFKSYFEFIGQSSATTSDLSKIQSFLTSSSSGALSCLICLERIRPSDPTWSCTSLCFAVFHLFCIQSWARQASDLAAARAATRLPITADKAAESASWNCPKCRIEYFKTQIPKSYVCFCGKLENPPSDDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGSLEDVRRCGYKEFSCNNPCSRLLDCGAHRCSEICHVGPCPPCRARGVFRCQCGQKKEERECCDRIFQCDNPCEKVLSCGKHVCKKGCHSGGCGECPLQGKRTCPCGKRIYEGMPCDAAVQLCGATCDKRLSCGYHRCPERCHRGQCVETCRVVVRKSCRCGSLKKDVPCYQDLACERKCQGIRDCGRHACKRRCCDGDCPPCSEICGRKLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCPKLCRITPLCRHASICKPHKCHYGACPPCRLPCEEEYPCGHTCKLRCHGSKPPPNPEFTLKPKKKKTIKQSECVPGTPCPRCPELVWRSCVGQHIGAERMMVCSDKSQFYCENLCGNPLPCGNHYCTKTCHALERQSSLNQLQRSEPCEDCCLPCQKVREPTCPHHCPQPCHPGECSPCKVLIKRSCHCGSMVHVFECIYYNSLSVKNQETIRSCGGPCHRKLPYCTHLCPVTCHPGQCPYPEKCSKKVNVRCKCQTLKKEWICQDVQSAYHRAGTHPRDVPKNQFGIGLIPCNSDCKSKVQLVESELQLRKSRVMEEKVPDTEKSLPKRRKRRERIQESNRTTKLQKIVSTTKQFLLSVFLFVALLAAIYYGYKGLLWLSDWMNEVDERRHRRYTPIS 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0749 911 CDD NF-X1-zinc-finger 428 476 - -
Glsi08g0749 911 CDD NF-X1-zinc-finger 321 368 - -
Glsi08g0749 911 Pfam NF-X1 type zinc finger 438 456 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 532 542 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 551 560 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 633 643 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 331 349 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 385 404 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 459 483 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 278 296 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 226 243 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 Pfam NF-X1 type zinc finger 677 692 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 CDD NF-X1-zinc-finger 268 316 - -
Glsi08g0749 911 CDD NF-X1-zinc-finger 455 503 - -
Glsi08g0749 911 ProSiteProfiles Zinc finger RING-type profile. 113 180 IPR001841 -
Glsi08g0749 911 MobiDBLite consensus disorder prediction 828 855 - -
Glsi08g0749 911 CDD RING-CH-C4HC3_NFXL1 111 180 - -
Glsi08g0749 911 SUPERFAMILY RING/U-box 111 188 - -
Glsi08g0749 911 CDD NF-X1-zinc-finger 375 424 - -
Glsi08g0749 911 MobiDBLite consensus disorder prediction 828 854 - -
Glsi08g0749 911 CDD NF-X1-zinc-finger 214 262 - -
Glsi08g0749 911 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 87 560 IPR034078 GO:0003700
Glsi08g0749 911 SMART znfxneu3 385 405 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 738 759 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 675 693 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 331 350 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 465 484 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 528 543 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 226 244 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 551 593 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 438 457 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 278 297 IPR000967 GO:0005634|GO:0008270
Glsi08g0749 911 SMART znfxneu3 633 669 IPR000967 GO:0005634|GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Glsi08g0749 zf-NF-X1 0.0053 No_clan