Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0744 ATGTGCAAGAAATGCAATTTCGTCACTGCTGATGGCATTAATCTTAAGAACAATCTGAATTCCAGGAAGGATCGATGCATCACAAAGCATATGCTCTCTTTCCCAGCGAACATGGCAGATGAAACACATAATGAGATGAGGGAGGGCTTTGTAGAAATTGTTCCGTTGGATCCTACCAAAAAGAAGGAAAAGAACATTGTGATGCAAGATCCTGACGATCGTTGCTCCAATGTGGAGCTCCAACGGCAAAATCATGCAACTAACCCTTCTGAGGTGTGTAAAACAATGCAGAAAACCCAACAAAAGCTTGTCAGAATCGTAGTCGCTGACCCTGATGCTACTGATACCGACTCTTGCCCCAGTGAAGATCAAGAAAAACGTGAAACTTTACGAGGAGGGGATAGGCAAATCACACAGATCAGCATCGGCATTCCCTCCTTGGATTCTGCTTCCTCATTTCTATCTACTCCCTTTTCTACCAAGGAAGACTTGACCCACTTTGAGAAACCTAAGAAATCCATCAGCTGCAATGCATCGTCAGGCAGCCACAAGAAGTTCAGAGGTGTTCGCCAGAGGAAATGGGGTCGGTGGGCTGCTGAAATTCGAGACCCAATCCGTCGAAAACGTATCTGGCTTGGAACCTTTGACACTGCAGAGGAAGCTGCCACAGAGTATGACAAGGCTGCATTGAAGCTTAAGGGGCCCGACGCCATTACCAACTTCCCTCACTCTACGATGATGGAGACATCTTCTGCCGCACATGTCAGTCCAAGCACTGATAGTTTTACCTCGTTCAGTGTAGTGGCATCGCCAACCTTCGTCTTGTCTTAG 831 0.4669 MCKKCNFVTADGINLKNNLNSRKDRCITKHMLSFPANMADETHNEMREGFVEIVPLDPTKKKEKNIVMQDPDDRCSNVELQRQNHATNPSEVCKTMQKTQQKLVRIVVADPDATDTDSCPSEDQEKRETLRGGDRQITQISIGIPSLDSASSFLSTPFSTKEDLTHFEKPKKSISCNASSGSHKKFRGVRQRKWGRWAAEIRDPIRRKRIWLGTFDTAEEAATEYDKAALKLKGPDAITNFPHSTMMETSSAAHVSPSTDSFTSFSVVASPTFVLS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0744 276 ProSiteProfiles AP2/ERF domain profile. 185 242 IPR001471 GO:0003700|GO:0006355
Glsi08g0744 276 CDD AP2 184 244 IPR001471 GO:0003700|GO:0006355
Glsi08g0744 276 SMART rav1_2 185 248 IPR001471 GO:0003700|GO:0006355
Glsi08g0744 276 MobiDBLite consensus disorder prediction 111 132 - -
Glsi08g0744 276 SUPERFAMILY DNA-binding domain 185 244 IPR016177 GO:0003677
Glsi08g0744 276 Gene3D AP2/ERF domain 184 244 IPR036955 GO:0003700|GO:0006355
Glsi08g0744 276 Pfam AP2 domain 185 234 IPR001471 GO:0003700|GO:0006355
Glsi08g0744 276 PRINTS Ethylene responsive element binding protein signature 208 224 IPR001471 GO:0003700|GO:0006355
Glsi08g0744 276 PRINTS Ethylene responsive element binding protein signature 186 197 IPR001471 GO:0003700|GO:0006355
Glsi08g0744 276 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 100 252 - -
Glsi08g0744 276 FunFam Ethylene-responsive transcription factor 2 184 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0744 Glsi-ChrGlsi08 5724588 5731484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0744 94 241 AP2-EREBP Transcription Factor Family AT4G27950 45.033 1.52e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g0744 AP2 4.5e-15 CL0081